RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 PAGR1Q9BTK6 254 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 CRISPLD2Q9H0B8 497 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 PUS7LQ9H0K6 701 aaKnown RBP11.72□□□□□ -0.53
VPS41-201ENST00000265745 PORCNQ9H237 461 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 SWAP70Q9UH65 585 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 RABGAP1Q9Y3P9 1069 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 SMIM22K7EJ46 135 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 MPHOSPH10O00566 681 aaKnown RBP11.71□□□□□ -0.53
VPS41-201ENST00000265745 CNMDO75829 334 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 FARP2O94887 1054 aaPredicted RBP11.71□□□□□ -0.53
VPS41-201ENST00000265745 TRIM32Q13049 653 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 MORN1Q5T089 497 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 C12orf60Q5U649 245 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 LBX2Q6XYB7 198 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 TMEM179Q6ZVK1 233 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 GPR142Q7Z601 462 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 PLEKHH3Q7Z736 793 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 SIAH1Q8IUQ4 282 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 CCAR1Q8IX12 1150 aaKnown RBP11.71□□□□□ -0.53
VPS41-201ENST00000265745 SOCS4Q8WXH5 440 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 DPF3Q92784 378 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 PCDHB15Q9Y5E8 787 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 SLC4A4Q9Y6R1 1079 aa11.71□□□□□ -0.53
VPS41-201ENST00000265745 PHIPQ8WWQ0 1821 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 RPTORQ8N122 1335 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 CYP2D7A0A087X1C5 515 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 AKR1B1P15121 316 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 CDK8P49336 464 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 CCNA1P78396 465 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 KIAA1755Q5JYT7 1200 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 TSHZ3Q63HK5 1081 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 CTR9Q6PD62 1173 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 KBTBD3Q8NAB2 608 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 TRIB2Q92519 343 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 GPATCH3Q96I76 525 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 CCDC17Q96LX7 622 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 STRBPQ96SI9 672 aaKnown RBP11.7□□□□□ -0.54
VPS41-201ENST00000265745 HTATIP2Q9BUP3 242 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.7□□□□□ -0.54
VPS41-201ENST00000265745 RPAP3Q9H6T3 665 aaPredicted RBP11.7□□□□□ -0.54
VPS41-201ENST00000265745 HMX1Q9NP08 348 aaPredicted RBP11.7□□□□□ -0.54
VPS41-201ENST00000265745 SIPA1L1O43166 1804 aa11.7□□□□□ -0.54
VPS41-201ENST00000265745 MAST2Q6P0Q8 1798 aa11.69□□□□□ -0.54
VPS41-201ENST00000265745 SPDYE16A6NNV3 312 aaPredicted RBP11.69□□□□□ -0.54
VPS41-201ENST00000265745 COG2Q14746 738 aa11.69□□□□□ -0.54
VPS41-201ENST00000265745 MAP3K21Q5TCX8 1036 aa11.69□□□□□ -0.54
VPS41-201ENST00000265745 C16orf86Q6ZW13 317 aa11.69□□□□□ -0.54
VPS41-201ENST00000265745 AMOTL1Q8IY63 956 aa11.69□□□□□ -0.54
VPS41-201ENST00000265745 TRMT44Q8IYL2 757 aaKnown RBP11.69□□□□□ -0.54
VPS41-201ENST00000265745 OSBP2Q969R2 916 aa11.69□□□□□ -0.54
VPS41-201ENST00000265745 DDRGK1Q96HY6 314 aa11.69□□□□□ -0.54
VPS41-201ENST00000265745 HOXC10Q9NYD6 342 aa11.69□□□□□ -0.54
VPS41-201ENST00000265745 BTBD7Q9P203 1132 aa11.69□□□□□ -0.54
VPS41-201ENST00000265745 COLQQ9Y215 455 aaPredicted RBP11.69□□□□□ -0.54
VPS41-201ENST00000265745 RNF113AO15541 343 aaKnown RBP11.68□□□□□ -0.54
VPS41-201ENST00000265745 RGS2P41220 211 aa11.68□□□□□ -0.54
VPS41-201ENST00000265745 LPAR1Q92633 364 aa11.68□□□□□ -0.54
VPS41-201ENST00000265745 TMX2Q9Y320 296 aa11.68□□□□□ -0.54
VPS41-201ENST00000265745 PTPRFP10586 1907 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 SLC15A5A6NIM6 579 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 GSG1L2A8MUP6 293 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 GLRX3O76003 335 aaKnown RBP11.67□□□□□ -0.54
VPS41-201ENST00000265745 ZFYP08048 801 aaPredicted RBP11.67□□□□□ -0.54
VPS41-201ENST00000265745 ZKSCAN1P17029 563 aaPredicted RBP11.67□□□□□ -0.54
VPS41-201ENST00000265745 PTPREP23469 700 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 RRP1P56182 461 aaKnown RBP11.67□□□□□ -0.54
VPS41-201ENST00000265745 ICA1Q05084 483 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 CACNB2Q08289 660 aaPredicted RBP11.67□□□□□ -0.54
VPS41-201ENST00000265745 MAP2K5Q13163 448 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 CCL14Q16627 93 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 SBK1Q52WX2 424 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 GIMAP6Q6P9H5 292 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 NECAB2Q7Z6G3 386 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 CLEC10AQ8IUN9 316 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 ANKLE1Q8NAG6 615 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 APPBP2Q92624 585 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 PAWRQ96IZ0 340 aaKnown RBP11.67□□□□□ -0.54
VPS41-201ENST00000265745 APBA2Q99767 749 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 VCPKMTQ9H867 229 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 KANSL2Q9H9L4 492 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 ARHGEF10LQ9HCE6 1279 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 OGDHLQ9ULD0 1010 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 NR2E3Q9Y5X4 410 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 LOC285556D6RIA3 1793 aa11.67□□□□□ -0.54
VPS41-201ENST00000265745 RBBP6Q7Z6E9 1792 aaKnown RBP11.67□□□□□ -0.54
VPS41-201ENST00000265745 TTC41PQ6P2S7 1318 aa11.66□□□□□ -0.54
VPS41-201ENST00000265745 HOXC6P09630 235 aa11.66□□□□□ -0.54
VPS41-201ENST00000265745 EEF2P13639 858 aaKnown RBP11.66□□□□□ -0.54
VPS41-201ENST00000265745 GRB14Q14449 540 aa11.66□□□□□ -0.54
VPS41-201ENST00000265745 SPICE1Q8N0Z3 855 aa11.66□□□□□ -0.54
VPS41-201ENST00000265745 MB21D1Q8N884 522 aa11.66□□□□□ -0.54
VPS41-201ENST00000265745 PI4K2BQ8TCG2 481 aa11.66□□□□□ -0.54
VPS41-201ENST00000265745 OTUD7AQ8TE49 926 aaPredicted RBP11.66□□□□□ -0.54
VPS41-201ENST00000265745 DIS3LQ8TF46 1054 aaKnown RBP11.66□□□□□ -0.54
VPS41-201ENST00000265745 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.66□□□□□ -0.54
VPS41-201ENST00000265745 MOV10L1Q9BXT6 1211 aaKnown RBP11.66□□□□□ -0.54
VPS41-201ENST00000265745 TANGO6Q9C0B7 1094 aa11.66□□□□□ -0.54
VPS41-201ENST00000265745 SH2D4AQ9H788 454 aa11.66□□□□□ -0.54
VPS41-201ENST00000265745 CWC22Q9HCG8 908 aaKnown RBP11.66□□□□□ -0.54
VPS41-201ENST00000265745 ARPP21Q9UBL0 812 aaPredicted RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms