RNA–Protein interactions for RNA: ENST00000263897.9

USE1-201, Transcript of unconventional SNARE in the ER 1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USE1, Length 843 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-201ENST00000263897 NUDT12Q9BQG2 462 aa19.23■□□□□ 0.67
USE1-201ENST00000263897 SH2D4AQ9H788 454 aa19.23■□□□□ 0.67
USE1-201ENST00000263897 SPDYE16A6NNV3 312 aaPredicted RBP19.22■□□□□ 0.67
USE1-201ENST00000263897 IGHDP01880 384 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 EEF2P13639 858 aaKnown RBP19.22■□□□□ 0.67
USE1-201ENST00000263897 RASA1P20936 1047 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 TDO2P48775 406 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 CCNA1P78396 465 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 GPR142Q7Z601 462 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 PLEKHH3Q7Z736 793 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 EVI5LQ96CN4 794 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 SHISA4Q96DD7 197 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 NACAP1Q9BZK3 213 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 VCPKMTQ9H867 229 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 MKNK2Q9HBH9 465 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 BTBD7Q9P203 1132 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 SUPT16HQ9Y5B9 1047 aaKnown RBP19.22■□□□□ 0.67
USE1-201ENST00000263897 PLXNB2O15031 1838 aa19.22■□□□□ 0.67
USE1-201ENST00000263897 SGPL1O95470 568 aa19.21■□□□□ 0.67
USE1-201ENST00000263897 HMGCRP04035 888 aa19.21■□□□□ 0.67
USE1-201ENST00000263897 XRCC5P13010 732 aaKnown RBP19.21■□□□□ 0.67
USE1-201ENST00000263897 CYP2B6P20813 491 aa19.21■□□□□ 0.67
USE1-201ENST00000263897 STK11IPQ8N1F8 1099 aa19.21■□□□□ 0.67
USE1-201ENST00000263897 U2AF1L4Q8WU68 220 aaKnown RBP19.21■□□□□ 0.67
USE1-201ENST00000263897 SOCS4Q8WXH5 440 aa19.21■□□□□ 0.67
USE1-201ENST00000263897 USP6NLQ92738 828 aa19.21■□□□□ 0.67
USE1-201ENST00000263897 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.21■□□□□ 0.67
USE1-201ENST00000263897 TANGO6Q9C0B7 1094 aa19.21■□□□□ 0.67
USE1-201ENST00000263897 LNPKQ9C0E8 428 aa19.21■□□□□ 0.67
USE1-201ENST00000263897 ROBO3Q96MS0 1386 aa19.2■□□□□ 0.66
USE1-201ENST00000263897 ATP2B2Q01814 1243 aa19.2■□□□□ 0.66
USE1-201ENST00000263897 MORN1Q5T089 497 aa19.2■□□□□ 0.66
USE1-201ENST00000263897 B4GALNT3Q6L9W6 998 aa19.2■□□□□ 0.66
USE1-201ENST00000263897 SPICE1Q8N0Z3 855 aa19.2■□□□□ 0.66
USE1-201ENST00000263897 CAPN2P17655 700 aa19.19■□□□□ 0.66
USE1-201ENST00000263897 DSG3P32926 999 aa19.19■□□□□ 0.66
USE1-201ENST00000263897 TICAM2Q86XR7 235 aa19.19■□□□□ 0.66
USE1-201ENST00000263897 ZNF444Q8N0Y2 327 aaPredicted RBP19.19■□□□□ 0.66
USE1-201ENST00000263897 TRIB2Q92519 343 aa19.19■□□□□ 0.66
USE1-201ENST00000263897 ZNF287Q9HBT7 754 aa19.19■□□□□ 0.66
USE1-201ENST00000263897 PAK6Q9NQU5 681 aaPredicted RBP19.19■□□□□ 0.66
USE1-201ENST00000263897 RLFQ13129 1914 aa19.19■□□□□ 0.66
USE1-201ENST00000263897 WDR46O15213 610 aaKnown RBP19.18■□□□□ 0.66
USE1-201ENST00000263897 RGS2P41220 211 aa19.18■□□□□ 0.66
USE1-201ENST00000263897 TRIM32Q13049 653 aa19.18■□□□□ 0.66
USE1-201ENST00000263897 CHD1LQ86WJ1 897 aa19.18■□□□□ 0.66
USE1-201ENST00000263897 TRMT44Q8IYL2 757 aaKnown RBP19.18■□□□□ 0.66
USE1-201ENST00000263897 DEFB118Q96PH6 123 aa19.18■□□□□ 0.66
USE1-201ENST00000263897 CWC22Q9HCG8 908 aaKnown RBP19.18■□□□□ 0.66
USE1-201ENST00000263897 NYAP2Q9P242 653 aa19.18■□□□□ 0.66
USE1-201ENST00000263897 RPTORQ8N122 1335 aa19.18■□□□□ 0.66
USE1-201ENST00000263897 SLC15A5A6NIM6 579 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 FLOT1O75955 427 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 TFRCP02786 760 aaKnown RBP19.17■□□□□ 0.66
USE1-201ENST00000263897 PTPREP23469 700 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 NUCB1Q02818 461 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 MAP2K5Q13163 448 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 WDR78Q5VTH9 848 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 CCDC129Q6ZRS4 1044 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 UBE2Q1Q7Z7E8 422 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 MB21D1Q8N884 522 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.17■□□□□ 0.66
USE1-201ENST00000263897 NAPBQ9H115 298 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 GOPCQ9HD26 462 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 HELLSQ9NRZ9 838 aa19.17■□□□□ 0.66
USE1-201ENST00000263897 CEP290O15078 2479 aa19.16■□□□□ 0.66
USE1-201ENST00000263897 GREB1LQ9C091 1923 aaPredicted RBP19.16■□□□□ 0.66
USE1-201ENST00000263897 PRDM1O75626 825 aa19.16■□□□□ 0.66
USE1-201ENST00000263897 PLEKHM2Q8IWE5 1019 aa19.16■□□□□ 0.66
USE1-201ENST00000263897 MOV10L1Q9BXT6 1211 aaKnown RBP19.16■□□□□ 0.66
USE1-201ENST00000263897 SPATC1LQ9H0A9 340 aa19.16■□□□□ 0.66
USE1-201ENST00000263897 CRISPLD2Q9H0B8 497 aa19.16■□□□□ 0.66
USE1-201ENST00000263897 HMX1Q9NP08 348 aaPredicted RBP19.16■□□□□ 0.66
USE1-201ENST00000263897 IGKV6D-41A0A0C4DH26 115 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 FOXP2O15409 715 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 SLC3A2P08195 630 aaKnown RBP19.15■□□□□ 0.66
USE1-201ENST00000263897 PDE4BQ07343 736 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 PPARAQ07869 468 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 CCL14Q16627 93 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 MAP3K21Q5TCX8 1036 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 ATG4CQ96DT6 458 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 OSBPL3Q9H4L5 887 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 CLIP2Q9UDT6 1046 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 ADAMTS5Q9UNA0 930 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 IVNS1ABPQ9Y6Y0 642 aa19.15■□□□□ 0.66
USE1-201ENST00000263897 BRCA2P51587 3418 aa19.14■□□□□ 0.65
USE1-201ENST00000263897 TRIM6-TRIM34B2RNG4 842 aa19.14■□□□□ 0.65
USE1-201ENST00000263897 STRNO43815 780 aa19.14■□□□□ 0.65
USE1-201ENST00000263897 ZKSCAN1P17029 563 aaPredicted RBP19.14■□□□□ 0.65
USE1-201ENST00000263897 SHCBP1Q8NEM2 672 aa19.14■□□□□ 0.65
USE1-201ENST00000263897 NEDD1Q8NHV4 660 aa19.14■□□□□ 0.65
USE1-201ENST00000263897 MKL1Q969V6 931 aa19.14■□□□□ 0.65
USE1-201ENST00000263897 APBA2Q99767 749 aa19.14■□□□□ 0.65
USE1-201ENST00000263897 MTMR4Q9NYA4 1195 aa19.14■□□□□ 0.65
USE1-201ENST00000263897 F5H6K3 240 aa19.13■□□□□ 0.65
USE1-201ENST00000263897 RAD21O60216 631 aa19.13■□□□□ 0.65
USE1-201ENST00000263897 FARP2O94887 1054 aaPredicted RBP19.13■□□□□ 0.65
USE1-201ENST00000263897 HOXC6P09630 235 aa19.13■□□□□ 0.65
USE1-201ENST00000263897 PRKAR2AP13861 404 aaKnown RBP19.13■□□□□ 0.65
USE1-201ENST00000263897 ERCC3P19447 782 aa19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms