RNA–Protein interactions for RNA: ENSMUST00000028728.5

Ubr1-201, Transcript of E3 ubiquitin-protein ligase UBR1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ubr1, Length 7,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ubr1-201ENSMUST00000028728 Q8CEZ4 452 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ccdc124Q9D8X2 217 aaKnown RBP11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 XlrP05531 208 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Gm5168Q4KL04 211 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Myo6Q64331 1265 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ccdc15Q8C9M2 810 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Kcnj14Q8JZN3 434 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Zbtb45Q52KG4 520 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Herc4Q6PAV2 1057 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Galnt17Q7TT15 598 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Zkscan8Q8BSL0 588 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Mterf4Q8BVN4 346 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 EngaseQ8BX80 734 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Znf335A2A5K6 1337 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Mroh9G5E8L9 891 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Casp14O89094 257 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ice2Q3UZ18 988 aaKnown RBP11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 NapaQ9DB05 295 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Cul1Q9WTX6 776 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 PhbP67778 272 aaKnown RBP11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Sorbs1Q62417 1290 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Nlrp9aQ66X03 949 aa11.17□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Kif24Q6NWW5 1356 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Krt13P08730 437 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 AdkP55264 361 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 PrimpolQ6P1E7 537 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ufl1Q8CCJ3 793 aaKnown RBP11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Sec63Q8VHE0 760 aaKnown RBP11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 A0A1W2P7S8 802 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Hspd1P63038 573 aaKnown RBP11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Tmed1Q3V009 227 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Cdc5lQ6A068 802 aaKnown RBP11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Nuf2Q99P69 463 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Mei1Q9D4I2 1268 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ptch1Q61115 1434 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Tmem94Q7TSH8 1360 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Cfap70D3YVL2 1141 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ighmbp2P40694 993 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Git1Q68FF6 770 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Vipas39Q8BGQ1 491 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ophn1Q99J31 802 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 3830403N18RikQ9D6C3 208 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Tpcn1Q9EQJ0 817 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 ErmapQ9JLN5 566 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 AlkP97793 1621 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 WizO88286 1684 aaKnown RBP11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 RpsaP14206 295 aaKnown RBP11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Fbxo41Q6NS60 873 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Spag7Q7TNE3 227 aaKnown RBP11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Rassf6Q80UQ2 353 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 P3h4Q8K2B0 443 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ap1b1O35643 943 aaKnown RBP11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Arhgap6O54834 987 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Hoxc9P09633 260 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Exoc3Q6KAR6 755 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Trim42Q9D2H5 723 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Stk11Q9WTK7 436 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Cyp26a1O55127 497 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Psmc2P46471 433 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Mettl14Q3UIK4 456 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 TfrcQ62351 763 aaKnown RBP11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Mtss1lQ6P9S0 715 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Mylk2Q8VCR8 613 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Thap12Q9CUX1 758 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 4930449I24RikQ9D5E3 319 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Kcnn1Q9EQR3 537 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Sorbs3Q9R1Z8 733 aa11.16□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Lrrc23O35125 340 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Cdk4P30285 303 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Pde1bQ01065 535 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Krt14Q61781 484 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Q6PD19 689 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Capn12Q9ER56 720 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ugt1a5B2RT14 529 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ift81O35594 676 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Pde6cQ91ZQ1 861 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ccdc182Q9D9C6 152 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Q3TYL0 343 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Zbtb16Q3UQ17 673 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ccdc84Q4VA36 332 aaKnown RBP11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Myef2Q8C854 591 aaKnown RBP11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Tbx22Q8K402 517 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Taf4bG5E8Z2 855 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Dzip1Q8BMD2 852 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Ero1aQ8R180 464 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Gpr108Q91WD0 569 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Mrpl12Q9DB15 201 aaKnown RBP11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Orc3Q9JK30 715 aaKnown RBP11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Recql4Q75NR7 1216 aaKnown RBP11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 ThemisQ8BGW0 636 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Rcn2Q8BP92 320 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Rab11fip4Q8BQP8 635 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Tada3Q8R0L9 432 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Cplx3Q8R1B5 158 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Lrrc8cQ8R502 803 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Farp2Q91VS8 1065 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 HgsQ99LI8 775 aa11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Rfwd2Q9R1A8 733 aaKnown RBP11.15□□□□□ -0.62
Ubr1-201ENSMUST00000028728 Sox5P35710 763 aa11.15□□□□□ -0.63
Ubr1-201ENSMUST00000028728 Atp2a3Q64518 1038 aa11.15□□□□□ -0.63
Retrieved 100 of 22,080 RNA–protein pairs in 45.1 ms