RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 POTEEQ6S8J3 1075 aa16.82■□□□□ 0.28
LINC00339-211ENST00000641009 UBE2Q1Q7Z7E8 422 aa16.82■□□□□ 0.28
LINC00339-211ENST00000641009 GPRC5AQ8NFJ5 357 aa16.82■□□□□ 0.28
LINC00339-211ENST00000641009 GCC1Q96CN9 775 aa16.82■□□□□ 0.28
LINC00339-211ENST00000641009 C12orf42Q96LP6 360 aa16.82■□□□□ 0.28
LINC00339-211ENST00000641009 DEFB118Q96PH6 123 aa16.82■□□□□ 0.28
LINC00339-211ENST00000641009 PAGR1Q9BTK6 254 aa16.82■□□□□ 0.28
LINC00339-211ENST00000641009 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.82■□□□□ 0.28
LINC00339-211ENST00000641009 DNAH12Q6ZR08 3092 aa16.82■□□□□ 0.28
LINC00339-211ENST00000641009 PRKAB2O43741 272 aa16.81■□□□□ 0.28
LINC00339-211ENST00000641009 SGPL1O95470 568 aa16.81■□□□□ 0.28
LINC00339-211ENST00000641009 ERVK-9P63128 1117 aa16.81■□□□□ 0.28
LINC00339-211ENST00000641009 ERVK-24P63145 666 aa16.81■□□□□ 0.28
LINC00339-211ENST00000641009 SEPT2Q15019 361 aa16.81■□□□□ 0.28
LINC00339-211ENST00000641009 Q3C1V9 767 aa16.81■□□□□ 0.28
LINC00339-211ENST00000641009 SLC44A5Q8NCS7 719 aa16.81■□□□□ 0.28
LINC00339-211ENST00000641009 KIAA1683Q9H0B3 1180 aa16.81■□□□□ 0.28
LINC00339-211ENST00000641009 PAK6Q9NQU5 681 aaPredicted RBP16.81■□□□□ 0.28
LINC00339-211ENST00000641009 MPHOSPH10O00566 681 aaKnown RBP16.8■□□□□ 0.28
LINC00339-211ENST00000641009 VCAM1P19320 739 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 PORCNQ9H237 461 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 SZT2Q5T011 3432 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 TRIOBPQ9H2D6 2365 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 COL11A1P12107 1806 aaPredicted RBP16.8■□□□□ 0.28
LINC00339-211ENST00000641009 USP17L15C9J2P7 530 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 USP17L13C9JLJ4 530 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 USP17L11C9JVI0 530 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 USP17L18D6R9N7 530 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 USP17L22D6RA61 530 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 USP17L17D6RBQ6 530 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 USP17L19D6RCP7 530 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 USP17L20D6RJB6 530 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 FARP2O94887 1054 aaPredicted RBP16.8■□□□□ 0.28
LINC00339-211ENST00000641009 HMGCRP04035 888 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 CYP2B6P20813 491 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 USP14P54578 494 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 USP17L24Q0WX57 530 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 TRIM32Q13049 653 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 DPF3Q92784 378 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 DYNLL2Q96FJ2 89 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 ATP8A2Q9NTI2 1148 aa16.8■□□□□ 0.28
LINC00339-211ENST00000641009 FRMPD3Q5JV73 1810 aa16.79■□□□□ 0.28
LINC00339-211ENST00000641009 H0YGN5 161 aa16.79■□□□□ 0.28
LINC00339-211ENST00000641009 SMIM22K7EJ46 135 aa16.79■□□□□ 0.28
LINC00339-211ENST00000641009 TFRCP02786 760 aaKnown RBP16.79■□□□□ 0.28
LINC00339-211ENST00000641009 UBE3CQ15386 1083 aa16.79■□□□□ 0.28
LINC00339-211ENST00000641009 HABP4Q5JVS0 413 aaKnown RBP16.79■□□□□ 0.28
LINC00339-211ENST00000641009 CATSPERGQ6ZRH7 1159 aa16.79■□□□□ 0.28
LINC00339-211ENST00000641009 GTF3C2Q8WUA4 911 aaPredicted RBP16.79■□□□□ 0.28
LINC00339-211ENST00000641009 TRIB2Q92519 343 aa16.79■□□□□ 0.28
LINC00339-211ENST00000641009 NUDT12Q9BQG2 462 aa16.79■□□□□ 0.28
LINC00339-211ENST00000641009 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.79■□□□□ 0.28
LINC00339-211ENST00000641009 A0A0G2JMZ2 1700 aa16.78■□□□□ 0.28
LINC00339-211ENST00000641009 CYP2D7A0A087X1C5 515 aa16.78■□□□□ 0.28
LINC00339-211ENST00000641009 A0A1W2PRG0 241 aa16.78■□□□□ 0.28
LINC00339-211ENST00000641009 CNMDO75829 334 aa16.78■□□□□ 0.28
LINC00339-211ENST00000641009 MAPK4P31152 587 aa16.78■□□□□ 0.28
LINC00339-211ENST00000641009 TSHZ3Q63HK5 1081 aa16.78■□□□□ 0.28
LINC00339-211ENST00000641009 CCAR1Q8IX12 1150 aaKnown RBP16.78■□□□□ 0.28
LINC00339-211ENST00000641009 SOCS4Q8WXH5 440 aa16.78■□□□□ 0.28
LINC00339-211ENST00000641009 PUS7LQ9H0K6 701 aaKnown RBP16.78■□□□□ 0.28
LINC00339-211ENST00000641009 RPAP3Q9H6T3 665 aaPredicted RBP16.78■□□□□ 0.28
LINC00339-211ENST00000641009 DCTPP1Q9H773 170 aa16.78■□□□□ 0.28
LINC00339-211ENST00000641009 ECHDC1Q9NTX5 307 aa16.78■□□□□ 0.28
LINC00339-211ENST00000641009 ZNFX1Q9P2E3 1918 aaKnown RBP16.78■□□□□ 0.28
LINC00339-211ENST00000641009 GPR142Q7Z601 462 aa16.77■□□□□ 0.28
LINC00339-211ENST00000641009 CRISPLD2Q9H0B8 497 aa16.77■□□□□ 0.28
LINC00339-211ENST00000641009 SWAP70Q9UH65 585 aa16.77■□□□□ 0.28
LINC00339-211ENST00000641009 RABGAP1Q9Y3P9 1069 aa16.77■□□□□ 0.28
LINC00339-211ENST00000641009 SLC4A4Q9Y6R1 1079 aa16.77■□□□□ 0.28
LINC00339-211ENST00000641009 MYH4Q9Y623 1939 aa16.76■□□□□ 0.27
LINC00339-211ENST00000641009 USP17L12C9JPN9 530 aa16.76■□□□□ 0.27
LINC00339-211ENST00000641009 USP17L21D6R901 530 aa16.76■□□□□ 0.27
LINC00339-211ENST00000641009 AKR1B1P15121 316 aa16.76■□□□□ 0.27
LINC00339-211ENST00000641009 C12orf60Q5U649 245 aa16.76■□□□□ 0.27
LINC00339-211ENST00000641009 ZSCAN25Q6NSZ9 544 aa16.76■□□□□ 0.27
LINC00339-211ENST00000641009 TMEM179Q6ZVK1 233 aa16.76■□□□□ 0.27
LINC00339-211ENST00000641009 CLEC10AQ8IUN9 316 aa16.76■□□□□ 0.27
LINC00339-211ENST00000641009 HTATIP2Q9BUP3 242 aa16.76■□□□□ 0.27
LINC00339-211ENST00000641009 HMX1Q9NP08 348 aaPredicted RBP16.76■□□□□ 0.27
LINC00339-211ENST00000641009 COLQQ9Y215 455 aaPredicted RBP16.76■□□□□ 0.27
LINC00339-211ENST00000641009 RPTORQ8N122 1335 aa16.76■□□□□ 0.27
LINC00339-211ENST00000641009 GREB1LQ9C091 1923 aaPredicted RBP16.76■□□□□ 0.27
LINC00339-211ENST00000641009 SPDYE16A6NNV3 312 aaPredicted RBP16.75■□□□□ 0.27
LINC00339-211ENST00000641009 XRCC5P13010 732 aaKnown RBP16.75■□□□□ 0.27
LINC00339-211ENST00000641009 MORN1Q5T089 497 aa16.75■□□□□ 0.27
LINC00339-211ENST00000641009 PLEKHH3Q7Z736 793 aa16.75■□□□□ 0.27
LINC00339-211ENST00000641009 USP6NLQ92738 828 aa16.75■□□□□ 0.27
LINC00339-211ENST00000641009 CWC22Q9HCG8 908 aaKnown RBP16.75■□□□□ 0.27
LINC00339-211ENST00000641009 BTBD7Q9P203 1132 aa16.75■□□□□ 0.27
LINC00339-211ENST00000641009 PRKAR2AP13861 404 aaKnown RBP16.74■□□□□ 0.27
LINC00339-211ENST00000641009 CDK8P49336 464 aa16.74■□□□□ 0.27
LINC00339-211ENST00000641009 CCL14Q16627 93 aa16.74■□□□□ 0.27
LINC00339-211ENST00000641009 KIAA1755Q5JYT7 1200 aa16.74■□□□□ 0.27
LINC00339-211ENST00000641009 WDR78Q5VTH9 848 aa16.74■□□□□ 0.27
LINC00339-211ENST00000641009 LBX2Q6XYB7 198 aa16.74■□□□□ 0.27
LINC00339-211ENST00000641009 AMOTL1Q8IY63 956 aa16.74■□□□□ 0.27
LINC00339-211ENST00000641009 DIS3LQ8TF46 1054 aaKnown RBP16.74■□□□□ 0.27
LINC00339-211ENST00000641009 DDRGK1Q96HY6 314 aa16.74■□□□□ 0.27
LINC00339-211ENST00000641009 GPATCH3Q96I76 525 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms