RNA–Protein interactions for RNA: ENST00000637450.1

CLN6-220, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 3

Gene CLN6, Length 868 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-220ENST00000637450 USP17L20D6RJB6 530 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 XRCC5P13010 732 aaKnown RBP22.38■■□□□ 1.17
CLN6-220ENST00000637450 CYP2B6P20813 491 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 USP14P54578 494 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 GABPAQ06546 454 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 USP17L24Q0WX57 530 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 ZYXQ15942 572 aaKnown RBP22.38■■□□□ 1.17
CLN6-220ENST00000637450 CHRDL2Q6WN34 429 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 ACER1Q8TDN7 264 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 TRIB2Q92519 343 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 FEZ1Q99689 392 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 KIAA1683Q9H0B3 1180 aa22.38■■□□□ 1.17
CLN6-220ENST00000637450 HMX1Q9NP08 348 aaPredicted RBP22.38■■□□□ 1.17
CLN6-220ENST00000637450 GUCY1A2P33402 732 aa22.37■■□□□ 1.17
CLN6-220ENST00000637450 CATSPERGQ6ZRH7 1159 aa22.37■■□□□ 1.17
CLN6-220ENST00000637450 SOCS4Q8WXH5 440 aa22.37■■□□□ 1.17
CLN6-220ENST00000637450 USP6NLQ92738 828 aa22.37■■□□□ 1.17
CLN6-220ENST00000637450 PAWRQ96IZ0 340 aaKnown RBP22.37■■□□□ 1.17
CLN6-220ENST00000637450 PAGR1Q9BTK6 254 aa22.37■■□□□ 1.17
CLN6-220ENST00000637450 PORCNQ9H237 461 aa22.37■■□□□ 1.17
CLN6-220ENST00000637450 MCM9Q9NXL9 1143 aa22.37■■□□□ 1.17
CLN6-220ENST00000637450 RCAN3Q9UKA8 241 aa22.37■■□□□ 1.17
CLN6-220ENST00000637450 GPR142Q7Z601 462 aa22.36■■□□□ 1.17
CLN6-220ENST00000637450 EDC3Q96F86 508 aaKnown RBP22.36■■□□□ 1.17
CLN6-220ENST00000637450 BCL11AQ9H165 835 aa22.36■■□□□ 1.17
CLN6-220ENST00000637450 RABGAP1Q9Y3P9 1069 aa22.36■■□□□ 1.17
CLN6-220ENST00000637450 TRIOBPQ9H2D6 2365 aa22.36■■□□□ 1.17
CLN6-220ENST00000637450 MYH1P12882 1939 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 CNMDO75829 334 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 VCAM1P19320 739 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 EVX2Q03828 476 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 PDE3AQ14432 1141 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 MORN1Q5T089 497 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 MAP3K21Q5TCX8 1036 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 PLEKHH3Q7Z736 793 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 CCAR1Q8IX12 1150 aaKnown RBP22.35■■□□□ 1.17
CLN6-220ENST00000637450 LCORLQ8N3X6 602 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 ANKLE1Q8NAG6 615 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 BOLA2Q9H3K6 86 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 DCP1AQ9NPI6 582 aaPredicted RBP22.35■■□□□ 1.17
CLN6-220ENST00000637450 PAG1Q9NWQ8 432 aa22.35■■□□□ 1.17
CLN6-220ENST00000637450 RBM27Q9P2N5 1060 aaKnown RBP22.35■■□□□ 1.17
CLN6-220ENST00000637450 EVI5O60447 810 aa22.34■■□□□ 1.17
CLN6-220ENST00000637450 ATP5JP18859 108 aa22.34■■□□□ 1.17
CLN6-220ENST00000637450 SEPT2Q15019 361 aa22.34■■□□□ 1.17
CLN6-220ENST00000637450 NECAB2Q7Z6G3 386 aa22.34■■□□□ 1.17
CLN6-220ENST00000637450 TRMT44Q8IYL2 757 aaKnown RBP22.34■■□□□ 1.17
CLN6-220ENST00000637450 DIS3LQ8TF46 1054 aaKnown RBP22.34■■□□□ 1.17
CLN6-220ENST00000637450 SDR42E1Q8WUS8 393 aa22.34■■□□□ 1.17
CLN6-220ENST00000637450 PRO3102Q9H379 93 aa22.34■■□□□ 1.17
CLN6-220ENST00000637450 RGS2P41220 211 aa22.33■■□□□ 1.17
CLN6-220ENST00000637450 LBX2Q6XYB7 198 aa22.33■■□□□ 1.17
CLN6-220ENST00000637450 PRKAR2AP13861 404 aaKnown RBP22.32■■□□□ 1.16
CLN6-220ENST00000637450 ADD2P35612 726 aa22.32■■□□□ 1.16
CLN6-220ENST00000637450 MNX1P50219 401 aaPredicted RBP22.32■■□□□ 1.16
CLN6-220ENST00000637450 CCNA1P78396 465 aa22.32■■□□□ 1.16
CLN6-220ENST00000637450 SLFNL1Q499Z3 407 aa22.32■■□□□ 1.16
CLN6-220ENST00000637450 HAUS7Q99871 368 aa22.32■■□□□ 1.16
CLN6-220ENST00000637450 ARMT1Q9H993 441 aa22.32■■□□□ 1.16
CLN6-220ENST00000637450 OGDHLQ9ULD0 1010 aa22.32■■□□□ 1.16
CLN6-220ENST00000637450 PLXNB2O15031 1838 aa22.31■■□□□ 1.16
CLN6-220ENST00000637450 A0A1W2PRG0 241 aa22.31■■□□□ 1.16
CLN6-220ENST00000637450 PRKAB2O43741 272 aa22.31■■□□□ 1.16
CLN6-220ENST00000637450 CYP2D6P10635 497 aa22.31■■□□□ 1.16
CLN6-220ENST00000637450 ZKSCAN1P17029 563 aaPredicted RBP22.31■■□□□ 1.16
CLN6-220ENST00000637450 CACNB2Q08289 660 aaPredicted RBP22.31■■□□□ 1.16
CLN6-220ENST00000637450 C20orf194Q5TEA3 1177 aa22.31■■□□□ 1.16
CLN6-220ENST00000637450 RPAP3Q9H6T3 665 aaPredicted RBP22.31■■□□□ 1.16
CLN6-220ENST00000637450 SZT2Q5T011 3432 aa22.31■■□□□ 1.16
CLN6-220ENST00000637450 MPHOSPH10O00566 681 aaKnown RBP22.3■■□□□ 1.16
CLN6-220ENST00000637450 CCL14Q16627 93 aa22.3■■□□□ 1.16
CLN6-220ENST00000637450 APBA2Q99767 749 aa22.3■■□□□ 1.16
CLN6-220ENST00000637450 DDX24Q9GZR7 859 aaKnown RBP eCLIP22.3■■□□□ 1.16
CLN6-220ENST00000637450 NBPF3Q9H094 633 aa22.3■■□□□ 1.16
CLN6-220ENST00000637450 CWC22Q9HCG8 908 aaKnown RBP22.3■■□□□ 1.16
CLN6-220ENST00000637450 ATP8A2Q9NTI2 1148 aa22.3■■□□□ 1.16
CLN6-220ENST00000637450 BTBD7Q9P203 1132 aa22.3■■□□□ 1.16
CLN6-220ENST00000637450 SWAP70Q9UH65 585 aa22.3■■□□□ 1.16
CLN6-220ENST00000637450 SPDYE16A6NNV3 312 aaPredicted RBP22.29■■□□□ 1.16
CLN6-220ENST00000637450 GLRX3O76003 335 aaKnown RBP22.29■■□□□ 1.16
CLN6-220ENST00000637450 MBD4O95243 580 aa22.29■■□□□ 1.16
CLN6-220ENST00000637450 MAP2K5Q13163 448 aa22.29■■□□□ 1.16
CLN6-220ENST00000637450 UBE3CQ15386 1083 aa22.29■■□□□ 1.16
CLN6-220ENST00000637450 SLC44A5Q8NCS7 719 aa22.29■■□□□ 1.16
CLN6-220ENST00000637450 DYNLL2Q96FJ2 89 aa22.29■■□□□ 1.16
CLN6-220ENST00000637450 LRRCC1Q9C099 1032 aa22.29■■□□□ 1.16
CLN6-220ENST00000637450 TMEM179Q6ZVK1 233 aa22.28■■□□□ 1.16
CLN6-220ENST00000637450 DDX60LQ5H9U9 1706 aaKnown RBP22.28■■□□□ 1.16
CLN6-220ENST00000637450 SLC15A5A6NIM6 579 aa22.27■■□□□ 1.16
CLN6-220ENST00000637450 CHGBP05060 677 aa22.27■■□□□ 1.16
CLN6-220ENST00000637450 PTPREP23469 700 aa22.27■■□□□ 1.16
CLN6-220ENST00000637450 COG2Q14746 738 aa22.27■■□□□ 1.16
CLN6-220ENST00000637450 LHX8Q68G74 356 aa22.27■■□□□ 1.16
CLN6-220ENST00000637450 C11orf49Q9H6J7 331 aa22.27■■□□□ 1.16
CLN6-220ENST00000637450 HOXC10Q9NYD6 342 aa22.27■■□□□ 1.16
CLN6-220ENST00000637450 SMARCA5O60264 1052 aaPredicted RBP22.26■■□□□ 1.15
CLN6-220ENST00000637450 CCND3P30281 292 aaPredicted RBP22.26■■□□□ 1.15
CLN6-220ENST00000637450 C12orf60Q5U649 245 aa22.26■■□□□ 1.15
CLN6-220ENST00000637450 WDR78Q5VTH9 848 aa22.26■■□□□ 1.15
CLN6-220ENST00000637450 SIAH1Q8IUQ4 282 aa22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms