RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 DYNLL2Q96FJ2 89 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 LZTS2Q9BRK4 669 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 SCAND2PQ9GZW5 306 aaPredicted RBP12.29□□□□□ -0.44
CLN3-248ENST00000636355 ATAD5Q96QE3 1844 aa12.29□□□□□ -0.44
CLN3-248ENST00000636355 IGKV6D-41A0A0C4DH26 115 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 LMNB1P20700 586 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 SMARCA1P28370 1054 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 SHMT1P34896 483 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 NFIAQ12857 509 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 RESTQ13127 1097 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 TRIM29Q14134 588 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 GRM4Q14833 912 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 FAM47AQ5JRC9 791 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 MCTP1Q6DN14 999 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 CRACR2BQ8N4Y2 399 aaPredicted RBP12.28□□□□□ -0.44
CLN3-248ENST00000636355 SLC44A5Q8NCS7 719 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 FAM151AQ8WW52 585 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 TRIM34Q9BYJ4 488 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 IL17RBQ9NRM6 502 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 CNTNAP5Q8WYK1 1306 aa12.28□□□□□ -0.44
CLN3-248ENST00000636355 ADD1P35611 737 aaKnown RBP12.27□□□□□ -0.45
CLN3-248ENST00000636355 TNNI2P48788 182 aa12.27□□□□□ -0.45
CLN3-248ENST00000636355 AKAP17AQ02040 695 aaKnown RBP12.27□□□□□ -0.45
CLN3-248ENST00000636355 EVX2Q03828 476 aa12.27□□□□□ -0.45
CLN3-248ENST00000636355 FUT2Q10981 343 aa12.27□□□□□ -0.45
CLN3-248ENST00000636355 TATDN1Q6P1N9 297 aa12.27□□□□□ -0.45
CLN3-248ENST00000636355 NBPF11Q86T75 865 aa12.27□□□□□ -0.45
CLN3-248ENST00000636355 STK11IPQ8N1F8 1099 aa12.27□□□□□ -0.45
CLN3-248ENST00000636355 NUP133Q8WUM0 1156 aa12.27□□□□□ -0.45
CLN3-248ENST00000636355 ALG1Q9BT22 464 aa12.27□□□□□ -0.45
CLN3-248ENST00000636355 MYL10Q9BUA6 226 aa12.27□□□□□ -0.45
CLN3-248ENST00000636355 ZNF70Q9UC06 446 aaPredicted RBP12.27□□□□□ -0.45
CLN3-248ENST00000636355 ZC3H4Q9UPT8 1303 aaKnown RBP12.27□□□□□ -0.45
CLN3-248ENST00000636355 hCG_1984214I3L0E3 225 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 PRPF3O43395 683 aaKnown RBP12.26□□□□□ -0.45
CLN3-248ENST00000636355 TRAK2O60296 914 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 TTLL1O95922 423 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 RXRAP19793 462 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 ASPRV1Q53RT3 343 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 TMEM179Q6ZVK1 233 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 ZNF713Q8N859 430 aaPredicted RBP12.26□□□□□ -0.45
CLN3-248ENST00000636355 CEP95Q96GE4 821 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 PRMT6Q96LA8 375 aaPredicted RBP12.26□□□□□ -0.45
CLN3-248ENST00000636355 ZNF396Q96N95 335 aaPredicted RBP12.26□□□□□ -0.45
CLN3-248ENST00000636355 SPZ1Q9BXG8 430 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 SLC26A6Q9BXS9 759 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 FHDC1Q9C0D6 1143 aaPredicted RBP12.26□□□□□ -0.45
CLN3-248ENST00000636355 TDRD3Q9H7E2 651 aaKnown RBP12.26□□□□□ -0.45
CLN3-248ENST00000636355 MYOZ2Q9NPC6 264 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 LMBRD1Q9NUN5 540 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 MTMR4Q9NYA4 1195 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 CFAP45Q9UL16 551 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 STX8Q9UNK0 236 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 CNTNAP1P78357 1384 aa12.26□□□□□ -0.45
CLN3-248ENST00000636355 DOCK1Q14185 1865 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 TBC1D12O60347 775 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 NMT2O60551 498 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 SNHG28P0DPA3 235 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 RASSF7Q02833 373 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 SAFBQ15424 915 aaKnown RBP eCLIP12.25□□□□□ -0.45
CLN3-248ENST00000636355 SLC4A8Q2Y0W8 1093 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 ZSCAN29Q8IWY8 852 aaPredicted RBP12.25□□□□□ -0.45
CLN3-248ENST00000636355 GPC2Q8N158 579 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 CSRNP1Q96S65 589 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 TMEM47Q9BQJ4 181 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 DNAJC18Q9H819 358 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 SH3GLB2Q9NR46 395 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 GINM1Q9NU53 330 aa12.25□□□□□ -0.45
CLN3-248ENST00000636355 ISY1Q9ULR0 285 aaKnown RBP12.25□□□□□ -0.45
CLN3-248ENST00000636355 DDTLA6NHG4 134 aaPredicted RBP12.24□□□□□ -0.45
CLN3-248ENST00000636355 WNT10BO00744 389 aa12.24□□□□□ -0.45
CLN3-248ENST00000636355 MMP1P03956 469 aa12.24□□□□□ -0.45
CLN3-248ENST00000636355 NCLP19338 710 aaKnown RBP12.24□□□□□ -0.45
CLN3-248ENST00000636355 U2AF2P26368 475 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLN3-248ENST00000636355 UBE2HP62256 183 aa12.24□□□□□ -0.45
CLN3-248ENST00000636355 KIF23Q02241 960 aaPredicted RBP12.24□□□□□ -0.45
CLN3-248ENST00000636355 GPATCH4Q5T3I0 446 aaKnown RBP12.24□□□□□ -0.45
CLN3-248ENST00000636355 SH3BP5LQ7L8J4 393 aa12.24□□□□□ -0.45
CLN3-248ENST00000636355 RAB11FIP4Q86YS3 637 aa12.24□□□□□ -0.45
CLN3-248ENST00000636355 CCDC144CPQ8IYA2 1237 aa12.24□□□□□ -0.45
CLN3-248ENST00000636355 PHKBQ93100 1093 aa12.24□□□□□ -0.45
CLN3-248ENST00000636355 SYAP1Q96A49 352 aaPredicted RBP12.24□□□□□ -0.45
CLN3-248ENST00000636355 HOOK2Q96ED9 719 aa12.24□□□□□ -0.45
CLN3-248ENST00000636355 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.24□□□□□ -0.45
CLN3-248ENST00000636355 FOXP1Q9H334 677 aaPredicted RBP12.24□□□□□ -0.45
CLN3-248ENST00000636355 KANSL2Q9H9L4 492 aa12.24□□□□□ -0.45
CLN3-248ENST00000636355 NYAP2Q9P242 653 aa12.24□□□□□ -0.45
CLN3-248ENST00000636355 PALM3A6NDB9 673 aaPredicted RBP12.23□□□□□ -0.45
CLN3-248ENST00000636355 PARP1P09874 1014 aaKnown RBP12.23□□□□□ -0.45
CLN3-248ENST00000636355 AKR1B1P15121 316 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 GMPSP49915 693 aaPredicted RBP12.23□□□□□ -0.45
CLN3-248ENST00000636355 MAP3K10Q02779 954 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 DNM1Q05193 864 aaKnown RBP12.23□□□□□ -0.45
CLN3-248ENST00000636355 TCP10Q12799 353 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 CERKLQ49MI3 558 aaPredicted RBP12.23□□□□□ -0.45
CLN3-248ENST00000636355 FOXD4L5Q5VV16 416 aaPredicted RBP12.23□□□□□ -0.45
CLN3-248ENST00000636355 KRT40Q6A162 431 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 FERMT3Q86UX7 667 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 CCDC148Q8NFR7 591 aa12.23□□□□□ -0.45
CLN3-248ENST00000636355 FOXD4L4Q8WXT5 416 aaPredicted RBP12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms