RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 TSPY2A6NKD2 308 aa14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 ADAMTS3O15072 1205 aa14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 CTCFLQ8NI51 663 aaPredicted RBP14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 CARD6Q9BX69 1037 aa14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 SRP68Q9UHB9 627 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 MYH3P11055 1940 aa14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 CD44P16070 742 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 TBC1D9BQ66K14 1250 aa14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 PTF1AQ7RTS3 328 aa14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 SRBD1Q8N5C6 995 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 PAGE5Q96GU1 130 aa14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 DDX41Q9UJV9 622 aaKnown RBP14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 PRDM4Q9UKN5 801 aa14.73□□□□□ -0.05
CCDC88A-214ENST00000621814 FANCGO15287 622 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 CCT6AP40227 531 aaKnown RBP14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 FAM182BQ5T319 152 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 REXO1L1PQ8IX06 675 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 PHF20Q9BVI0 1012 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 IRX2Q9BZI1 471 aaPredicted RBP14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 LZTFL1Q9NQ48 299 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 ZSCAN12O43309 604 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 SARSP49591 514 aaKnown RBP14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 DMTNQ08495 405 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 TROAPQ12815 778 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 TTC38Q5R3I4 469 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 ENOX1Q8TC92 643 aaKnown RBP14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 UBXN4Q92575 508 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 ZSWIM4Q9H7M6 989 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 ST7Q9NRC1 585 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 BSDC1Q9NW68 430 aaPredicted RBP14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 MCM9Q9NXL9 1143 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 UBE4AQ14139 1066 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 FAM98CQ17RN3 349 aaKnown RBP14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 KANK3Q6NY19 840 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 TRIM65Q6PJ69 517 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 ZNF771Q7L3S4 317 aaPredicted RBP14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 TC2NQ8N9U0 490 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 LINC00116Q8NCU8 138 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 RASSF8Q8NHQ8 419 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 RASGRP4Q8TDF6 673 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 GPKOWQ92917 476 aaPredicted RBP eCLIP14.72□□□□□ -0.052e-6■■□□□ 12.1
CCDC88A-214ENST00000621814 WDR24Q96S15 920 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 PLIN2Q99541 437 aa14.72□□□□□ -0.05
CCDC88A-214ENST00000621814 SPATA31A1Q5TZJ5 1347 aa14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 SOWAHDA6NJG2 315 aa14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 ARHGAP6O43182 974 aa14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 CCP110O43303 1012 aa14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 PRPF3O43395 683 aaKnown RBP14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 TXNRD3Q86VQ6 643 aa14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 ZNF579Q8NAF0 562 aaKnown RBP14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 CCDC34Q96HJ3 373 aa14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 KCND1Q9NSA2 647 aa14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 COL4A1P02462 1669 aa14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 ABCA3Q99758 1704 aa14.71□□□□□ -0.05
CCDC88A-214ENST00000621814 KDM4FA0A1W2PPD8 638 aa14.71□□□□□ -0.06
CCDC88A-214ENST00000621814 USP17L8P0C7I0 530 aa14.71□□□□□ -0.06
CCDC88A-214ENST00000621814 PLCD1P51178 756 aa14.71□□□□□ -0.06
CCDC88A-214ENST00000621814 NBPF5PQ86XG9 351 aaPredicted RBP14.71□□□□□ -0.06
CCDC88A-214ENST00000621814 NSUN4Q96CB9 384 aaKnown RBP14.71□□□□□ -0.06
CCDC88A-214ENST00000621814 CTNND2Q9UQB3 1225 aa14.71□□□□□ -0.06
CCDC88A-214ENST00000621814 COL1A1P02452 1464 aaPredicted RBP14.71□□□□□ -0.06
CCDC88A-214ENST00000621814 PES1O00541 588 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 ZNF18P17022 549 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 CASQ1P31415 396 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 HIBADHP31937 336 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 RPS8P62241 208 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 FUT2Q10981 343 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 RGS22Q8NE09 1264 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 L2HGDHQ9H9P8 463 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 DCP1AQ9NPI6 582 aaPredicted RBP14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 A0A0U1RQJ8 604 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 SLFN14P0C7P3 912 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 DHX8Q14562 1220 aaKnown RBP14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 PPFIBP1Q86W92 1011 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 TMEM139Q8IV31 216 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 ATRIPQ8WXE1 791 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 DYNLL2Q96FJ2 89 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 SYNRGQ9UMZ2 1314 aa14.7□□□□□ -0.06
CCDC88A-214ENST00000621814 PIP4K2BP78356 416 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 RBL2Q08999 1139 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 NT5DC1Q5TFE4 455 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 RRAGBQ5VZM2 374 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 TMTC3Q6ZXV5 915 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 IGSF22Q8N9C0 903 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 CRNKL1Q9BZJ0 848 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 ANAPC4Q9UJX5 808 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 ZNF804BA4D1E1 1349 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 CCDC93Q567U6 631 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 DZIP1Q86YF9 867 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 NLRP3Q96P20 1036 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 RBM28Q9NW13 759 aaKnown RBP14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 ZNF446Q9NWS9 450 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 EEF2KMTQ96G04 330 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 GPR101Q96P66 508 aaPredicted RBP14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 SETDB2Q96T68 719 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 BRIP1Q9BX63 1249 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 VPS16Q9H269 839 aa14.69□□□□□ -0.06
CCDC88A-214ENST00000621814 USP5P45974 858 aa14.68□□□□□ -0.06
CCDC88A-214ENST00000621814 CLCN6P51797 869 aa14.68□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms