RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 ZKSCAN1P17029 563 aaPredicted RBP11.87□□□□□ -0.51
UPF1-213ENST00000601981 VEGFBP49765 207 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 NEK4P51957 841 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 INHBEP58166 350 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 SNAPC2Q13487 334 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 CREB3L3Q68CJ9 461 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 ESR2Q92731 530 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 FEZ1Q99689 392 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 TM6SF1Q9BZW5 370 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 KRT23Q9C075 422 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 ARHGEF10LQ9HCE6 1279 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 ZHX2Q9Y6X8 837 aa11.87□□□□□ -0.51
UPF1-213ENST00000601981 CXCL11O14625 94 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 SLC27A2O14975 620 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 RANBP6O60518 1105 aaKnown RBP11.86□□□□□ -0.51
UPF1-213ENST00000601981 PRDM1O75626 825 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 CETPP11597 493 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 AKR1B1P15121 316 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 RASA1P20936 1047 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 EVX2Q03828 476 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 ICA1Q05084 483 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 CCDC178Q5BJE1 867 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 RRP12Q5JTH9 1297 aaKnown RBP11.86□□□□□ -0.51
UPF1-213ENST00000601981 OTUD7BQ6GQQ9 843 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 RALYLQ86SE5 291 aaKnown RBP11.86□□□□□ -0.51
UPF1-213ENST00000601981 RASEFQ8IZ41 740 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 ZNF280CQ8ND82 737 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 BEGAINQ9BUH8 593 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 WDR18Q9BV38 432 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 KANSL2Q9H9L4 492 aa11.86□□□□□ -0.51
UPF1-213ENST00000601981 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.86□□□□□ -0.51
UPF1-213ENST00000601981 LOC285556D6RIA3 1793 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 PLIN4Q96Q06 1357 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 TRIM75PA6NK02 468 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 FAM155AB1AL88 458 aaPredicted RBP11.85□□□□□ -0.51
UPF1-213ENST00000601981 C19orf81C9J6K1 198 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 USP17L10C9JJH3 530 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 IRF6O14896 467 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 CYP21A2P08686 494 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 FGRP09769 529 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 DDIT3P35638 169 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 USP14P54578 494 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 TFAP4Q01664 338 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 MAP2K1Q02750 393 aaPredicted RBP11.85□□□□□ -0.51
UPF1-213ENST00000601981 MKRN3Q13064 507 aaKnown RBP11.85□□□□□ -0.51
UPF1-213ENST00000601981 KRT32Q14532 448 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 RRP1BQ14684 758 aaKnown RBP11.85□□□□□ -0.51
UPF1-213ENST00000601981 SEPT2Q15019 361 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 TSGA10IPQ3SY00 556 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 FASTKD5Q7L8L6 764 aaKnown RBP11.85□□□□□ -0.51
UPF1-213ENST00000601981 IQCA1Q86XH1 822 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 NEDD1Q8NHV4 660 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 SLKQ9H2G2 1235 aaPredicted RBP11.85□□□□□ -0.51
UPF1-213ENST00000601981 TMOD4Q9NZQ9 345 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 CIZ1Q9ULV3 898 aaPredicted RBP11.85□□□□□ -0.51
UPF1-213ENST00000601981 KCNH4Q9UQ05 1017 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 AFG3L2Q9Y4W6 797 aa11.85□□□□□ -0.51
UPF1-213ENST00000601981 CCL15-CCL14A0A0B4J2E2 113 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 SMIM22K7EJ46 135 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 ALDH1A1P00352 501 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 PSMA5P28066 241 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 ATP2B2Q01814 1243 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 KIF23Q02241 960 aaPredicted RBP11.84□□□□□ -0.51
UPF1-213ENST00000601981 SPP2Q13103 211 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 CCL15Q16663 113 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 TBC1D10CQ8IV04 446 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 NCOA7Q8NI08 942 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 CNKSR2Q8WXI2 1034 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 TTC14Q96N46 770 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 ANP32EQ9BTT0 268 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 ZSWIM6Q9HCJ5 1215 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 CHMP5Q9NZZ3 219 aa11.84□□□□□ -0.51
UPF1-213ENST00000601981 A0A0G2JLL6 359 aaPredicted RBP11.83□□□□□ -0.52
UPF1-213ENST00000601981 ERICH2A1L162 156 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 AOC2O75106 756 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 TTLL1O95922 423 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 HSP90AA1P07900 732 aaKnown RBP11.83□□□□□ -0.52
UPF1-213ENST00000601981 GJA5P36382 358 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 BACE1P56817 501 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 PABPC4Q13310 644 aaKnown RBP eCLIP11.83□□□□□ -0.52
UPF1-213ENST00000601981 SART3Q15020 963 aaKnown RBP11.83□□□□□ -0.52
UPF1-213ENST00000601981 FAM47AQ5JRC9 791 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 USP17L2Q6R6M4 530 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 PRRT2Q7Z6L0 340 aaPredicted RBP11.83□□□□□ -0.52
UPF1-213ENST00000601981 PROCA1Q8NCQ7 364 aaPredicted RBP11.83□□□□□ -0.52
UPF1-213ENST00000601981 JAKMIP1Q96N16 626 aaKnown RBP11.83□□□□□ -0.52
UPF1-213ENST00000601981 UBAC1Q9BSL1 405 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 UPF3BQ9BZI7 483 aaKnown RBP11.83□□□□□ -0.52
UPF1-213ENST00000601981 GOPCQ9HD26 462 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 SYNPO2Q9UMS6 1093 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 CYP46A1Q9Y6A2 500 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 NEDD4P46934 1319 aa11.83□□□□□ -0.52
UPF1-213ENST00000601981 E7EWF7 191 aa11.82□□□□□ -0.52
UPF1-213ENST00000601981 KDM4AO75164 1064 aa11.82□□□□□ -0.52
UPF1-213ENST00000601981 CASTP20810 708 aaKnown RBP11.82□□□□□ -0.52
UPF1-213ENST00000601981 MTMR2Q13614 643 aa11.82□□□□□ -0.52
UPF1-213ENST00000601981 CUL4AQ13619 759 aa11.82□□□□□ -0.52
UPF1-213ENST00000601981 GADL1Q6ZQY3 521 aa11.82□□□□□ -0.52
UPF1-213ENST00000601981 CCDC84Q86UT8 332 aaPredicted RBP11.82□□□□□ -0.52
UPF1-213ENST00000601981 NBPF3Q9H094 633 aa11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms