RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 PDE4DIPQ5VU43 2346 aa31.31■■■□□ 2.6
PNKP-216ENST00000601816 USP17L12C9JPN9 530 aa31.31■■■□□ 2.6
PNKP-216ENST00000601816 USP17L21D6R901 530 aa31.31■■■□□ 2.6
PNKP-216ENST00000601816 GTF3C2Q8WUA4 911 aaPredicted RBP31.31■■■□□ 2.6
PNKP-216ENST00000601816 APPBP2Q92624 585 aa31.31■■■□□ 2.6
PNKP-216ENST00000601816 ZBTB47Q9UFB7 747 aaPredicted RBP31.31■■■□□ 2.6
PNKP-216ENST00000601816 BAZ2AQ9UIF9 1905 aaKnown RBP31.3■■■□□ 2.6
PNKP-216ENST00000601816 CYP2D7A0A087X1C5 515 aa31.3■■■□□ 2.6
PNKP-216ENST00000601816 RNF113AO15541 343 aaKnown RBP31.3■■■□□ 2.6
PNKP-216ENST00000601816 GLRX3O76003 335 aaKnown RBP31.3■■■□□ 2.6
PNKP-216ENST00000601816 ZFYP08048 801 aaPredicted RBP31.3■■■□□ 2.6
PNKP-216ENST00000601816 TMEM179Q6ZVK1 233 aa31.3■■■□□ 2.6
PNKP-216ENST00000601816 OTUD7AQ8TE49 926 aaPredicted RBP31.3■■■□□ 2.6
PNKP-216ENST00000601816 USP17L15C9J2P7 530 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 USP17L13C9JLJ4 530 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 USP17L11C9JVI0 530 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 USP17L18D6R9N7 530 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 USP17L22D6RA61 530 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 USP17L17D6RBQ6 530 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 USP17L19D6RCP7 530 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 USP17L20D6RJB6 530 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 USP17L24Q0WX57 530 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 LRRFIP1Q32MZ4 808 aaKnown RBP31.29■■■□□ 2.6
PNKP-216ENST00000601816 GPRC5AQ8NFJ5 357 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 PI4K2BQ8TCG2 481 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 PXYLP1Q8TE99 480 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 STRBPQ96SI9 672 aaKnown RBP31.29■■■□□ 2.6
PNKP-216ENST00000601816 TXNRD2Q9NNW7 524 aa31.29■■■□□ 2.6
PNKP-216ENST00000601816 CCL5P13501 91 aa31.28■■■□□ 2.6
PNKP-216ENST00000601816 ELNP15502 786 aa31.28■■■□□ 2.6
PNKP-216ENST00000601816 VCAM1P19320 739 aa31.28■■■□□ 2.6
PNKP-216ENST00000601816 OSBP2Q969R2 916 aa31.28■■■□□ 2.6
PNKP-216ENST00000601816 MX1P20591 662 aa31.27■■■□□ 2.6
PNKP-216ENST00000601816 HDAC1Q13547 482 aaPredicted RBP31.27■■■□□ 2.6
PNKP-216ENST00000601816 PRPF38BQ5VTL8 546 aaKnown RBP31.27■■■□□ 2.6
PNKP-216ENST00000601816 RBPJLQ9UBG7 517 aa31.27■■■□□ 2.6
PNKP-216ENST00000601816 ARPP21Q9UBL0 812 aaPredicted RBP31.27■■■□□ 2.6
PNKP-216ENST00000601816 BRCA2P51587 3418 aa31.26■■■□□ 2.6
PNKP-216ENST00000601816 SMIM22K7EJ46 135 aa31.26■■■□□ 2.59
PNKP-216ENST00000601816 PEX10O60683 326 aa31.26■■■□□ 2.59
PNKP-216ENST00000601816 CDK8P49336 464 aa31.26■■■□□ 2.59
PNKP-216ENST00000601816 ANKRD45Q5TZF3 282 aa31.26■■■□□ 2.59
PNKP-216ENST00000601816 CTR9Q6PD62 1173 aa31.26■■■□□ 2.59
PNKP-216ENST00000601816 C16orf86Q6ZW13 317 aa31.26■■■□□ 2.59
PNKP-216ENST00000601816 GCC1Q96CN9 775 aa31.26■■■□□ 2.59
PNKP-216ENST00000601816 CCDC17Q96LX7 622 aa31.26■■■□□ 2.59
PNKP-216ENST00000601816 PAGR1Q9BTK6 254 aa31.26■■■□□ 2.59
PNKP-216ENST00000601816 INHAP05111 366 aa31.25■■■□□ 2.59
PNKP-216ENST00000601816 AKR1B1P15121 316 aa31.25■■■□□ 2.59
PNKP-216ENST00000601816 ERVK-9P63128 1117 aa31.25■■■□□ 2.59
PNKP-216ENST00000601816 ERVK-24P63145 666 aa31.25■■■□□ 2.59
PNKP-216ENST00000601816 AAMPQ13685 434 aa31.25■■■□□ 2.59
PNKP-216ENST00000601816 CATSPERGQ6ZRH7 1159 aa31.25■■■□□ 2.59
PNKP-216ENST00000601816 RNF208Q9H0X6 261 aa31.25■■■□□ 2.59
PNKP-216ENST00000601816 MYH8P13535 1937 aa31.24■■■□□ 2.59
PNKP-216ENST00000601816 A0A1W2PRG0 241 aa31.24■■■□□ 2.59
PNKP-216ENST00000601816 GPAA1O43292 621 aa31.24■■■□□ 2.59
PNKP-216ENST00000601816 GIMAP6Q6P9H5 292 aa31.24■■■□□ 2.59
PNKP-216ENST00000601816 NKX2-3Q8TAU0 364 aa31.24■■■□□ 2.59
PNKP-216ENST00000601816 RPAP3Q9H6T3 665 aaPredicted RBP31.24■■■□□ 2.59
PNKP-216ENST00000601816 GSG1L2A8MUP6 293 aa31.23■■■□□ 2.59
PNKP-216ENST00000601816 GJB1P08034 283 aa31.23■■■□□ 2.59
PNKP-216ENST00000601816 CCAR1Q8IX12 1150 aaKnown RBP31.23■■■□□ 2.59
PNKP-216ENST00000601816 FSD1Q9BTV5 496 aa31.23■■■□□ 2.59
PNKP-216ENST00000601816 GJD2Q9UKL4 321 aa31.23■■■□□ 2.59
PNKP-216ENST00000601816 MAPK4P31152 587 aa31.22■■■□□ 2.59
PNKP-216ENST00000601816 ICA1Q05084 483 aa31.22■■■□□ 2.59
PNKP-216ENST00000601816 POTEEQ6S8J3 1075 aa31.22■■■□□ 2.59
PNKP-216ENST00000601816 UNC93B1Q9H1C4 597 aa31.22■■■□□ 2.59
PNKP-216ENST00000601816 ARHGEF10LQ9HCE6 1279 aa31.22■■■□□ 2.59
PNKP-216ENST00000601816 RABGAP1Q9Y3P9 1069 aa31.22■■■□□ 2.59
PNKP-216ENST00000601816 DOCK3Q8IZD9 2030 aa31.22■■■□□ 2.59
PNKP-216ENST00000601816 SALL3Q9BXA9 1300 aa31.22■■■□□ 2.59
PNKP-216ENST00000601816 M0R2C6 588 aa31.21■■■□□ 2.59
PNKP-216ENST00000601816 GNAT2P19087 354 aa31.21■■■□□ 2.59
PNKP-216ENST00000601816 GJA8P48165 433 aa31.21■■■□□ 2.59
PNKP-216ENST00000601816 Q3C1V9 767 aa31.21■■■□□ 2.59
PNKP-216ENST00000601816 SBK1Q52WX2 424 aa31.21■■■□□ 2.59
PNKP-216ENST00000601816 CLEC10AQ8IUN9 316 aa31.21■■■□□ 2.59
PNKP-216ENST00000601816 SHISA4Q96DD7 197 aa31.21■■■□□ 2.59
PNKP-216ENST00000601816 SH2D4AQ9H788 454 aa31.21■■■□□ 2.59
PNKP-216ENST00000601816 SOCS4Q8WXH5 440 aa31.2■■■□□ 2.59
PNKP-216ENST00000601816 LBX2Q6XYB7 198 aa31.19■■■□□ 2.58
PNKP-216ENST00000601816 NUDT12Q9BQG2 462 aa31.19■■■□□ 2.58
PNKP-216ENST00000601816 PORCNQ9H237 461 aa31.19■■■□□ 2.58
PNKP-216ENST00000601816 MKI67P46013 3256 aaKnown RBP31.18■■■□□ 2.58
PNKP-216ENST00000601816 TDO2P48775 406 aa31.18■■■□□ 2.58
PNKP-216ENST00000601816 CCNA1P78396 465 aa31.18■■■□□ 2.58
PNKP-216ENST00000601816 SIAH1Q8IUQ4 282 aa31.18■■■□□ 2.58
PNKP-216ENST00000601816 TANGO6Q9C0B7 1094 aa31.18■■■□□ 2.58
PNKP-216ENST00000601816 CWC22Q9HCG8 908 aaKnown RBP31.18■■■□□ 2.58
PNKP-216ENST00000601816 TMX2Q9Y320 296 aa31.18■■■□□ 2.58
PNKP-216ENST00000601816 SPDYE16A6NNV3 312 aaPredicted RBP31.17■■■□□ 2.58
PNKP-216ENST00000601816 MINDY4BA8MYZ0 360 aa31.17■■■□□ 2.58
PNKP-216ENST00000601816 CNMDO75829 334 aa31.17■■■□□ 2.58
PNKP-216ENST00000601816 HMGCRP04035 888 aa31.17■■■□□ 2.58
PNKP-216ENST00000601816 APPP05067 770 aa31.17■■■□□ 2.58
PNKP-216ENST00000601816 LPAR1Q92633 364 aa31.17■■■□□ 2.58
PNKP-216ENST00000601816 EPB41L4AQ9HCS5 686 aaPredicted RBP31.17■■■□□ 2.58
PNKP-216ENST00000601816 CYP2B6P20813 491 aa31.16■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms