RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 SDR42E1Q8WUS8 393 aa21.3■■□□□ 1
SHKBP1-223ENST00000600552 TRIB2Q92519 343 aa21.3■■□□□ 1
SHKBP1-223ENST00000600552 EHD4Q9H223 541 aa21.3■■□□□ 1
SHKBP1-223ENST00000600552 PORCNQ9H237 461 aa21.3■■□□□ 1
SHKBP1-223ENST00000600552 ZBTB40Q9NUA8 1239 aa21.3■■□□□ 1
SHKBP1-223ENST00000600552 USP17L15C9J2P7 530 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 USP17L13C9JLJ4 530 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 USP17L11C9JVI0 530 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 USP17L18D6R9N7 530 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 USP17L22D6RA61 530 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 USP17L17D6RBQ6 530 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 USP17L19D6RCP7 530 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 USP17L20D6RJB6 530 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 CYP2D6P10635 497 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 MAPK4P31152 587 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 SHMT1P34896 483 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 USP17L24Q0WX57 530 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 SEPT2Q15019 361 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 LCORLQ8N3X6 602 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 ARMT1Q9H993 441 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 RBM27Q9P2N5 1060 aaKnown RBP21.29■■□□□ 1
SHKBP1-223ENST00000600552 RCAN3Q9UKA8 241 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 RPTORQ8N122 1335 aa21.29■■□□□ 1
SHKBP1-223ENST00000600552 RAB11FIP3O75154 756 aa21.28■■□□□ 1
SHKBP1-223ENST00000600552 USP14P54578 494 aa21.28■■□□□ 1
SHKBP1-223ENST00000600552 NECAB2Q7Z6G3 386 aa21.28■■□□□ 1
SHKBP1-223ENST00000600552 PLEKHH3Q7Z736 793 aa21.28■■□□□ 1
SHKBP1-223ENST00000600552 CRISPLD2Q9H0B8 497 aa21.28■■□□□ 1
SHKBP1-223ENST00000600552 PLXNB2O15031 1838 aa21.27■■□□□ 1
SHKBP1-223ENST00000600552 NAV1Q8NEY1 1877 aa21.27■■□□□ 1
SHKBP1-223ENST00000600552 PRKAR2AP13861 404 aaKnown RBP21.27■■□□□ 1
SHKBP1-223ENST00000600552 ZKSCAN1P17029 563 aaPredicted RBP21.27■■□□□ 1
SHKBP1-223ENST00000600552 GPR142Q7Z601 462 aa21.27■■□□□ 1
SHKBP1-223ENST00000600552 GTF3C2Q8WUA4 911 aaPredicted RBP21.27■■□□□ 1
SHKBP1-223ENST00000600552 PAG1Q9NWQ8 432 aa21.27■■□□□ 1
SHKBP1-223ENST00000600552 PRKAB2O43741 272 aa21.26■□□□□ 0.99
SHKBP1-223ENST00000600552 VCAM1P19320 739 aa21.26■□□□□ 0.99
SHKBP1-223ENST00000600552 CCL14Q16627 93 aa21.26■□□□□ 0.99
SHKBP1-223ENST00000600552 TMED8Q6PL24 325 aaPredicted RBP21.26■□□□□ 0.99
SHKBP1-223ENST00000600552 POTEEQ6S8J3 1075 aa21.26■□□□□ 0.99
SHKBP1-223ENST00000600552 SAMD1Q6SPF0 538 aaPredicted RBP21.26■□□□□ 0.99
SHKBP1-223ENST00000600552 CATSPERGQ6ZRH7 1159 aa21.26■□□□□ 0.99
SHKBP1-223ENST00000600552 SLC44A5Q8NCS7 719 aa21.26■□□□□ 0.99
SHKBP1-223ENST00000600552 SOCS4Q8WXH5 440 aa21.26■□□□□ 0.99
SHKBP1-223ENST00000600552 RPAP3Q9H6T3 665 aaPredicted RBP21.26■□□□□ 0.99
SHKBP1-223ENST00000600552 SMARCA5O60264 1052 aaPredicted RBP21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 MBD4O95243 580 aa21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 GUCY1A2P33402 732 aa21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 RGS2P41220 211 aa21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 C20orf194Q5TEA3 1177 aa21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 C7orf61Q8IZ16 206 aa21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 DYNLL2Q96FJ2 89 aa21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 C12orf42Q96LP6 360 aa21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 KIAA1683Q9H0B3 1180 aa21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 CHMP4BQ9H444 224 aaKnown RBP21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 RABGAP1Q9Y3P9 1069 aa21.25■□□□□ 0.99
SHKBP1-223ENST00000600552 TCRBV5S4A2TA0A5A2 114 aa21.24■□□□□ 0.99
SHKBP1-223ENST00000600552 CNMDO75829 334 aa21.24■□□□□ 0.99
SHKBP1-223ENST00000600552 CCNA1P78396 465 aa21.24■□□□□ 0.99
SHKBP1-223ENST00000600552 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.24■□□□□ 0.99
SHKBP1-223ENST00000600552 DCP1AQ9NPI6 582 aaPredicted RBP21.24■□□□□ 0.99
SHKBP1-223ENST00000600552 CHGBP05060 677 aa21.23■□□□□ 0.99
SHKBP1-223ENST00000600552 CACNB2Q08289 660 aaPredicted RBP21.23■□□□□ 0.99
SHKBP1-223ENST00000600552 TANGO6Q9C0B7 1094 aa21.23■□□□□ 0.99
SHKBP1-223ENST00000600552 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.23■□□□□ 0.99
SHKBP1-223ENST00000600552 NBPF3Q9H094 633 aa21.23■□□□□ 0.99
SHKBP1-223ENST00000600552 STAP2Q9UGK3 403 aa21.23■□□□□ 0.99
SHKBP1-223ENST00000600552 ZMYND8Q9ULU4 1186 aaPredicted RBP21.23■□□□□ 0.99
SHKBP1-223ENST00000600552 CYP2D7A0A087X1C5 515 aa21.22■□□□□ 0.99
SHKBP1-223ENST00000600552 GLRX3O76003 335 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-223ENST00000600552 XRCC5P13010 732 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-223ENST00000600552 CCND3P30281 292 aaPredicted RBP21.22■□□□□ 0.99
SHKBP1-223ENST00000600552 GABPAQ06546 454 aa21.22■□□□□ 0.99
SHKBP1-223ENST00000600552 MORN1Q5T089 497 aa21.22■□□□□ 0.99
SHKBP1-223ENST00000600552 TRMT44Q8IYL2 757 aaKnown RBP21.22■□□□□ 0.99
SHKBP1-223ENST00000600552 C11orf49Q9H6J7 331 aa21.22■□□□□ 0.99
SHKBP1-223ENST00000600552 BTBD7Q9P203 1132 aa21.22■□□□□ 0.99
SHKBP1-223ENST00000600552 IVNS1ABPQ9Y6Y0 642 aa21.22■□□□□ 0.99
SHKBP1-223ENST00000600552 A0A1W2PRG0 241 aa21.21■□□□□ 0.99
SHKBP1-223ENST00000600552 CAPN2P17655 700 aa21.21■□□□□ 0.99
SHKBP1-223ENST00000600552 ATP5JP18859 108 aa21.21■□□□□ 0.99
SHKBP1-223ENST00000600552 ADD2P35612 726 aa21.21■□□□□ 0.99
SHKBP1-223ENST00000600552 ATP2B2Q01814 1243 aa21.21■□□□□ 0.99
SHKBP1-223ENST00000600552 MAP2K5Q13163 448 aa21.21■□□□□ 0.99
SHKBP1-223ENST00000600552 CLEC10AQ8IUN9 316 aa21.21■□□□□ 0.99
SHKBP1-223ENST00000600552 ANKLE1Q8NAG6 615 aa21.21■□□□□ 0.99
SHKBP1-223ENST00000600552 USP6NLQ92738 828 aa21.21■□□□□ 0.99
SHKBP1-223ENST00000600552 APBA2Q99767 749 aa21.21■□□□□ 0.99
SHKBP1-223ENST00000600552 BAZ2AQ9UIF9 1905 aaKnown RBP21.2■□□□□ 0.98
SHKBP1-223ENST00000600552 SPDYE16A6NNV3 312 aaPredicted RBP21.2■□□□□ 0.98
SHKBP1-223ENST00000600552 SMIM22K7EJ46 135 aa21.2■□□□□ 0.98
SHKBP1-223ENST00000600552 AMOTL1Q8IY63 956 aa21.2■□□□□ 0.98
SHKBP1-223ENST00000600552 HAUS7Q99871 368 aa21.2■□□□□ 0.98
SHKBP1-223ENST00000600552 LRRCC1Q9C099 1032 aa21.2■□□□□ 0.98
SHKBP1-223ENST00000600552 SLC4A4Q9Y6R1 1079 aa21.2■□□□□ 0.98
SHKBP1-223ENST00000600552 AKR1B1P15121 316 aa21.19■□□□□ 0.98
SHKBP1-223ENST00000600552 SYN1P17600 705 aa21.19■□□□□ 0.98
SHKBP1-223ENST00000600552 CNGA1P29973 690 aa21.19■□□□□ 0.98
SHKBP1-223ENST00000600552 PLS1Q14651 629 aa21.19■□□□□ 0.98
SHKBP1-223ENST00000600552 MAP3K21Q5TCX8 1036 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 74.7 ms