RNA–Protein interactions for RNA: ENST00000599833.1

SHKBP1-221, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 761 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-221ENST00000599833 AMOTL1Q8IY63 956 aa23.27■■□□□ 1.32
SHKBP1-221ENST00000599833 CCDC17Q96LX7 622 aa23.27■■□□□ 1.32
SHKBP1-221ENST00000599833 AS3MTQ9HBK9 375 aa23.27■■□□□ 1.32
SHKBP1-221ENST00000599833 GPR25O00155 361 aa23.26■■□□□ 1.31
SHKBP1-221ENST00000599833 PDHXO00330 501 aa23.26■■□□□ 1.31
SHKBP1-221ENST00000599833 STK11IPQ8N1F8 1099 aa23.26■■□□□ 1.31
SHKBP1-221ENST00000599833 PROCA1Q8NCQ7 364 aaPredicted RBP23.26■■□□□ 1.31
SHKBP1-221ENST00000599833 NKX2-3Q8TAU0 364 aa23.26■■□□□ 1.31
SHKBP1-221ENST00000599833 INCENPQ9NQS7 918 aa23.26■■□□□ 1.31
SHKBP1-221ENST00000599833 EMILIN3Q9NT22 766 aa23.26■■□□□ 1.31
SHKBP1-221ENST00000599833 AGTPBP1Q9UPW5 1226 aa23.26■■□□□ 1.31
SHKBP1-221ENST00000599833 SLC45A1Q9Y2W3 748 aa23.26■■□□□ 1.31
SHKBP1-221ENST00000599833 RAD50Q92878 1312 aa23.26■■□□□ 1.31
SHKBP1-221ENST00000599833 ZSWIM8A7E2V4 1837 aa23.25■■□□□ 1.31
SHKBP1-221ENST00000599833 SGSM2O43147 1006 aa23.25■■□□□ 1.31
SHKBP1-221ENST00000599833 CTDSPL2Q05D32 466 aa23.25■■□□□ 1.31
SHKBP1-221ENST00000599833 RAB3GAP1Q15042 981 aa23.25■■□□□ 1.31
SHKBP1-221ENST00000599833 OTUD7BQ6GQQ9 843 aa23.25■■□□□ 1.31
SHKBP1-221ENST00000599833 FASTKD5Q7L8L6 764 aaKnown RBP23.25■■□□□ 1.31
SHKBP1-221ENST00000599833 C12orf42Q96LP6 360 aa23.25■■□□□ 1.31
SHKBP1-221ENST00000599833 DSCC1Q9BVC3 393 aa23.25■■□□□ 1.31
SHKBP1-221ENST00000599833 RLFQ13129 1914 aa23.25■■□□□ 1.31
SHKBP1-221ENST00000599833 PLIN4Q96Q06 1357 aa23.25■■□□□ 1.31
SHKBP1-221ENST00000599833 USP17L10C9JJH3 530 aa23.24■■□□□ 1.31
SHKBP1-221ENST00000599833 PRDM1O75626 825 aa23.24■■□□□ 1.31
SHKBP1-221ENST00000599833 TAF1CQ15572 869 aaPredicted RBP23.24■■□□□ 1.31
SHKBP1-221ENST00000599833 GADL1Q6ZQY3 521 aa23.24■■□□□ 1.31
SHKBP1-221ENST00000599833 ZNF296Q8WUU4 475 aaPredicted RBP23.24■■□□□ 1.31
SHKBP1-221ENST00000599833 KIAA1683Q9H0B3 1180 aa23.24■■□□□ 1.31
SHKBP1-221ENST00000599833 CABP5Q9NP86 173 aa23.24■■□□□ 1.31
SHKBP1-221ENST00000599833 C19orf81C9J6K1 198 aa23.23■■□□□ 1.31
SHKBP1-221ENST00000599833 MFAP1P55081 439 aaKnown RBP23.23■■□□□ 1.31
SHKBP1-221ENST00000599833 KIAA1755Q5JYT7 1200 aa23.23■■□□□ 1.31
SHKBP1-221ENST00000599833 PARP14Q460N5 1801 aa23.23■■□□□ 1.31
SHKBP1-221ENST00000599833 MYH4Q9Y623 1939 aa23.23■■□□□ 1.31
SHKBP1-221ENST00000599833 MPHOSPH10O00566 681 aaKnown RBP23.22■■□□□ 1.31
SHKBP1-221ENST00000599833 TLR2O60603 784 aa23.22■■□□□ 1.31
SHKBP1-221ENST00000599833 CYP2C8P10632 490 aa23.22■■□□□ 1.31
SHKBP1-221ENST00000599833 POTEEQ6S8J3 1075 aa23.22■■□□□ 1.31
SHKBP1-221ENST00000599833 C17orf99Q6UX52 265 aa23.22■■□□□ 1.31
SHKBP1-221ENST00000599833 TBC1D10CQ8IV04 446 aa23.22■■□□□ 1.31
SHKBP1-221ENST00000599833 PTH1RQ03431 593 aa23.21■■□□□ 1.31
SHKBP1-221ENST00000599833 TMX2Q9Y320 296 aa23.21■■□□□ 1.31
SHKBP1-221ENST00000599833 ORC4O43929 436 aa23.2■■□□□ 1.3
SHKBP1-221ENST00000599833 HOXA7P31268 230 aaPredicted RBP23.2■■□□□ 1.3
SHKBP1-221ENST00000599833 HAND2P61296 217 aa23.2■■□□□ 1.3
SHKBP1-221ENST00000599833 USP17L2Q6R6M4 530 aa23.2■■□□□ 1.3
SHKBP1-221ENST00000599833 MKNK2Q9HBH9 465 aa23.2■■□□□ 1.3
SHKBP1-221ENST00000599833 ZFYVE28Q9HCC9 887 aa23.2■■□□□ 1.3
SHKBP1-221ENST00000599833 BCRP11274 1271 aa23.19■■□□□ 1.3
SHKBP1-221ENST00000599833 NOVP48745 357 aa23.19■■□□□ 1.3
SHKBP1-221ENST00000599833 ICA1Q05084 483 aa23.19■■□□□ 1.3
SHKBP1-221ENST00000599833 PDE4BQ07343 736 aa23.19■■□□□ 1.3
SHKBP1-221ENST00000599833 NEDD1Q8NHV4 660 aa23.19■■□□□ 1.3
SHKBP1-221ENST00000599833 KANSL2Q9H9L4 492 aa23.19■■□□□ 1.3
SHKBP1-221ENST00000599833 BRCA2P51587 3418 aa23.18■■□□□ 1.3
SHKBP1-221ENST00000599833 EEF2P13639 858 aaKnown RBP23.18■■□□□ 1.3
SHKBP1-221ENST00000599833 VCAM1P19320 739 aa23.18■■□□□ 1.3
SHKBP1-221ENST00000599833 ZYXQ15942 572 aaKnown RBP23.18■■□□□ 1.3
SHKBP1-221ENST00000599833 FAM47AQ5JRC9 791 aa23.18■■□□□ 1.3
SHKBP1-221ENST00000599833 STAG1Q8WVM7 1258 aa23.18■■□□□ 1.3
SHKBP1-221ENST00000599833 ESYT1Q9BSJ8 1104 aa23.18■■□□□ 1.3
SHKBP1-221ENST00000599833 A0A0G2JMZ2 1700 aa23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 FKTNO75072 461 aa23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 CTGFP29279 349 aa23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 ZNF444Q8N0Y2 327 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 RUFY2Q8WXA3 655 aa23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 CEP95Q96GE4 821 aa23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 PARK7Q99497 189 aaKnown RBP23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 ASCC2Q9H1I8 757 aaPredicted RBP23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 IL17RBQ9NRM6 502 aa23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 CPA4Q9UI42 421 aa23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 MGAMO43451 1857 aa23.17■■□□□ 1.3
SHKBP1-221ENST00000599833 NEDD4P46934 1319 aa23.16■■□□□ 1.3
SHKBP1-221ENST00000599833 USP14P54578 494 aa23.16■■□□□ 1.3
SHKBP1-221ENST00000599833 LSG1Q9H089 658 aaKnown RBP23.16■■□□□ 1.3
SHKBP1-221ENST00000599833 ZNF287Q9HBT7 754 aa23.16■■□□□ 1.3
SHKBP1-221ENST00000599833 MTMR4Q9NYA4 1195 aa23.16■■□□□ 1.3
SHKBP1-221ENST00000599833 TMOD4Q9NZQ9 345 aa23.16■■□□□ 1.3
SHKBP1-221ENST00000599833 NYAP2Q9P242 653 aa23.16■■□□□ 1.3
SHKBP1-221ENST00000599833 TAF6LQ9Y6J9 622 aa23.16■■□□□ 1.3
SHKBP1-221ENST00000599833 SLC3A2P08195 630 aaKnown RBP23.15■■□□□ 1.3
SHKBP1-221ENST00000599833 TFAP4Q01664 338 aa23.15■■□□□ 1.3
SHKBP1-221ENST00000599833 AKNAD1Q5T1N1 836 aa23.15■■□□□ 1.3
SHKBP1-221ENST00000599833 MAP4K1Q92918 833 aa23.15■■□□□ 1.3
SHKBP1-221ENST00000599833 MKL1Q969V6 931 aa23.15■■□□□ 1.3
SHKBP1-221ENST00000599833 FEZ1Q99689 392 aa23.15■■□□□ 1.3
SHKBP1-221ENST00000599833 VCPKMTQ9H867 229 aa23.15■■□□□ 1.3
SHKBP1-221ENST00000599833 NMT2O60551 498 aa23.14■■□□□ 1.29
SHKBP1-221ENST00000599833 SP3Q02447 781 aa23.14■■□□□ 1.29
SHKBP1-221ENST00000599833 P2RX7Q99572 595 aaKnown RBP23.14■■□□□ 1.29
SHKBP1-221ENST00000599833 ZNF213O14771 459 aa23.13■■□□□ 1.29
SHKBP1-221ENST00000599833 CATSPERGQ6ZRH7 1159 aa23.13■■□□□ 1.29
SHKBP1-221ENST00000599833 CD99L2Q8TCZ2 262 aa23.13■■□□□ 1.29
SHKBP1-221ENST00000599833 ARHGAP39Q9C0H5 1083 aa23.13■■□□□ 1.29
SHKBP1-221ENST00000599833 ARHGEF10LQ9HCE6 1279 aa23.13■■□□□ 1.29
SHKBP1-221ENST00000599833 DOCK3Q8IZD9 2030 aa23.13■■□□□ 1.29
SHKBP1-221ENST00000599833 CYP21A2P08686 494 aa23.12■■□□□ 1.29
SHKBP1-221ENST00000599833 TSPY3P0CV98 308 aa23.12■■□□□ 1.29
SHKBP1-221ENST00000599833 TSPY8P0CW00 308 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms