RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 F8W031 263 aaPredicted RBP16.69■□□□□ 0.26
VRK3-217ENST00000599538 ADAMTS3O15072 1205 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 NPR1P16066 1061 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 MSNP26038 577 aaKnown RBP16.69■□□□□ 0.26
VRK3-217ENST00000599538 NPY5RQ15761 445 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 DOK7Q18PE1 504 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 CTCFLQ8NI51 663 aaPredicted RBP16.69■□□□□ 0.26
VRK3-217ENST00000599538 CABP5Q9NP86 173 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.69■□□□□ 0.26
VRK3-217ENST00000599538 HPSEQ9Y251 543 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 FAM205AQ6ZU69 1335 aa16.69■□□□□ 0.26
VRK3-217ENST00000599538 WNT7AO00755 349 aa16.68■□□□□ 0.26
VRK3-217ENST00000599538 IGSF3O75054 1194 aa16.68■□□□□ 0.26
VRK3-217ENST00000599538 RASA1P20936 1047 aa16.68■□□□□ 0.26
VRK3-217ENST00000599538 STAG2Q8N3U4 1231 aa16.68■□□□□ 0.26
VRK3-217ENST00000599538 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.68■□□□□ 0.265e-6■■■■□ 19.3
VRK3-217ENST00000599538 FLT1P17948 1338 aa16.68■□□□□ 0.26
VRK3-217ENST00000599538 GAKO14976 1311 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 STX1AQ16623 288 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 RASGRP2Q7LDG7 609 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 FAM163AQ96GL9 167 aaPredicted RBP16.67■□□□□ 0.26
VRK3-217ENST00000599538 DAGLAQ9Y4D2 1042 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 PARP3Q9Y6F1 533 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 RXRBP28702 533 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 TMC4Q7Z404 712 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 SPC24Q8NBT2 197 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 PNMA1Q8ND90 353 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 ZC3H12CQ9C0D7 883 aaKnown RBP16.67■□□□□ 0.26
VRK3-217ENST00000599538 TTC12Q9H892 705 aaPredicted RBP16.67■□□□□ 0.26
VRK3-217ENST00000599538 KIAA1468Q9P260 1216 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 MTMR7Q9Y216 660 aa16.67■□□□□ 0.26
VRK3-217ENST00000599538 TSPY3P0CV98 308 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 TSPY8P0CW00 308 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 SYKP43405 635 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 SLC35G1Q2M3R5 365 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 RESP18Q5W5W9 173 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 TBC1D22AQ8WUA7 517 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 COA1Q9GZY4 146 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 KAT14Q9H8E8 782 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 ANO8Q9HCE9 1232 aaPredicted RBP16.66■□□□□ 0.26
VRK3-217ENST00000599538 KCNQ5Q9NR82 932 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 DDX60LQ5H9U9 1706 aaKnown RBP16.66■□□□□ 0.26
VRK3-217ENST00000599538 SNED1Q8TER0 1413 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 BIN1O00499 593 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 CDK8P49336 464 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 RILPL1Q5EBL4 403 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 DPP8Q6V1X1 898 aaPredicted RBP16.66■□□□□ 0.26
VRK3-217ENST00000599538 DGKHQ86XP1 1220 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 ZNF444Q8N0Y2 327 aaPredicted RBP16.66■□□□□ 0.26
VRK3-217ENST00000599538 JMYQ8N9B5 988 aa16.66■□□□□ 0.26
VRK3-217ENST00000599538 ZNF622Q969S3 477 aaKnown RBP eCLIP16.66■□□□□ 0.26
VRK3-217ENST00000599538 FBXO2Q9UK22 296 aaPredicted RBP16.66■□□□□ 0.26
VRK3-217ENST00000599538 CUTAO60888 179 aa16.65■□□□□ 0.26
VRK3-217ENST00000599538 PDE6BP35913 854 aa16.65■□□□□ 0.26
VRK3-217ENST00000599538 DPCR1Q3MIW9 517 aa16.65■□□□□ 0.26
VRK3-217ENST00000599538 AMOTL1Q8IY63 956 aa16.65■□□□□ 0.26
VRK3-217ENST00000599538 MASTLQ96GX5 879 aa16.65■□□□□ 0.26
VRK3-217ENST00000599538 MYH1P12882 1939 aa16.65■□□□□ 0.26
VRK3-217ENST00000599538 KRT2P35908 639 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 SCNN1DP51172 638 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 ISM2Q6H9L7 571 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 C16orf86Q6ZW13 317 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 DHX40Q8IX18 779 aaKnown RBP16.64■□□□□ 0.25
VRK3-217ENST00000599538 KRI1Q8N9T8 703 aaKnown RBP16.64■□□□□ 0.25
VRK3-217ENST00000599538 ANKS1AQ92625 1134 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 TNFRSF25Q93038 417 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 STX8Q9UNK0 236 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 TNS1Q9HBL0 1735 aaKnown RBP16.64■□□□□ 0.25
VRK3-217ENST00000599538 FAM237AA0A1B0GTK4 181 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 XBP1P17861 261 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 PTPREP23469 700 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 ALDH1B1P30837 517 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 PICALMQ13492 652 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 LONRF3Q496Y0 759 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 FLAD1Q8NFF5 587 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 TMEM47Q9BQJ4 181 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 DDX4Q9NQI0 724 aaKnown RBP16.64■□□□□ 0.25
VRK3-217ENST00000599538 ANO10Q9NW15 660 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 ZNF219Q9P2Y4 722 aaPredicted RBP16.64■□□□□ 0.25
VRK3-217ENST00000599538 MAD2L2Q9UI95 211 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 ADAMTSL1Q8N6G6 1762 aa16.64■□□□□ 0.25
VRK3-217ENST00000599538 SCG2P13521 617 aa16.63■□□□□ 0.25
VRK3-217ENST00000599538 USP49Q70CQ1 688 aa16.63■□□□□ 0.25
VRK3-217ENST00000599538 RGS17Q9UGC6 210 aaPredicted RBP16.63■□□□□ 0.25
VRK3-217ENST00000599538 FOXN1O15353 648 aa16.63■□□□□ 0.25
VRK3-217ENST00000599538 CYTH3O43739 400 aa16.63■□□□□ 0.25
VRK3-217ENST00000599538 PLCG2P16885 1265 aa16.63■□□□□ 0.25
VRK3-217ENST00000599538 PFKFB3Q16875 520 aaPredicted RBP16.63■□□□□ 0.25
VRK3-217ENST00000599538 GPKOWQ92917 476 aaPredicted RBP eCLIP16.63■□□□□ 0.25
VRK3-217ENST00000599538 EYA3Q99504 573 aa16.63■□□□□ 0.25
VRK3-217ENST00000599538 CPVLQ9H3G5 476 aa16.63■□□□□ 0.25
VRK3-217ENST00000599538 DBNDD1Q9H9R9 158 aa16.63■□□□□ 0.25
VRK3-217ENST00000599538 TCP11L1Q9NUJ3 509 aa16.63■□□□□ 0.25
VRK3-217ENST00000599538 KCNH3Q9ULD8 1083 aa16.63■□□□□ 0.25
VRK3-217ENST00000599538 TTF2Q9UNY4 1162 aaKnown RBP16.63■□□□□ 0.25
VRK3-217ENST00000599538 ZNF500O60304 480 aaPredicted RBP16.62■□□□□ 0.25
VRK3-217ENST00000599538 GOLGA8HP0CJ92 632 aa16.62■□□□□ 0.25
VRK3-217ENST00000599538 HMGB2P26583 209 aaKnown RBP16.62■□□□□ 0.25
VRK3-217ENST00000599538 CHRNA5P30532 468 aa16.62■□□□□ 0.25
VRK3-217ENST00000599538 PNOCQ13519 176 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms