RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 CD99L2Q8TCZ2 262 aa16.54■□□□□ 0.24
UPF1-205ENST00000598209 FEZ1Q99689 392 aa16.54■□□□□ 0.24
UPF1-205ENST00000598209 DIAPH3Q9NSV4 1193 aa16.54■□□□□ 0.24
UPF1-205ENST00000598209 CPA4Q9UI42 421 aa16.54■□□□□ 0.24
UPF1-205ENST00000598209 CCDC171Q6TFL3 1326 aa16.53■□□□□ 0.24
UPF1-205ENST00000598209 HIP1O00291 1037 aa16.53■□□□□ 0.24
UPF1-205ENST00000598209 PABPC4Q13310 644 aaKnown RBP eCLIP16.53■□□□□ 0.24
UPF1-205ENST00000598209 ZYXQ15942 572 aaKnown RBP16.53■□□□□ 0.24
UPF1-205ENST00000598209 C17orf99Q6UX52 265 aa16.53■□□□□ 0.24
UPF1-205ENST00000598209 ZNF589Q86UQ0 364 aaPredicted RBP16.53■□□□□ 0.24
UPF1-205ENST00000598209 ACER1Q8TDN7 264 aa16.53■□□□□ 0.24
UPF1-205ENST00000598209 PNMA3Q9UL41 463 aa16.53■□□□□ 0.24
UPF1-205ENST00000598209 PPARAQ07869 468 aa16.52■□□□□ 0.24
UPF1-205ENST00000598209 CWC27Q6UX04 472 aaKnown RBP16.52■□□□□ 0.24
UPF1-205ENST00000598209 KIAA1683Q9H0B3 1180 aa16.52■□□□□ 0.24
UPF1-205ENST00000598209 MKNK2Q9HBH9 465 aa16.52■□□□□ 0.24
UPF1-205ENST00000598209 EMILIN3Q9NT22 766 aa16.52■□□□□ 0.24
UPF1-205ENST00000598209 MYH4Q9Y623 1939 aa16.52■□□□□ 0.23
UPF1-205ENST00000598209 RASA1P20936 1047 aa16.51■□□□□ 0.23
UPF1-205ENST00000598209 OSBPP22059 807 aa16.51■□□□□ 0.23
UPF1-205ENST00000598209 USP14P54578 494 aa16.51■□□□□ 0.23
UPF1-205ENST00000598209 MFAP1P55081 439 aaKnown RBP16.51■□□□□ 0.23
UPF1-205ENST00000598209 CAP1Q01518 475 aa16.51■□□□□ 0.23
UPF1-205ENST00000598209 ALX1Q15699 326 aa16.51■□□□□ 0.23
UPF1-205ENST00000598209 CLEC10AQ8IUN9 316 aa16.51■□□□□ 0.23
UPF1-205ENST00000598209 SMCR8Q8TEV9 937 aaPredicted RBP16.51■□□□□ 0.23
UPF1-205ENST00000598209 CCDC136Q96JN2 1154 aa16.51■□□□□ 0.23
UPF1-205ENST00000598209 C12orf42Q96LP6 360 aa16.51■□□□□ 0.23
UPF1-205ENST00000598209 ASCC2Q9H1I8 757 aaPredicted RBP16.51■□□□□ 0.23
UPF1-205ENST00000598209 ZNF287Q9HBT7 754 aa16.51■□□□□ 0.23
UPF1-205ENST00000598209 TRIM17Q9Y577 477 aa16.51■□□□□ 0.23
UPF1-205ENST00000598209 A0A1W2PRG0 241 aa16.5■□□□□ 0.23
UPF1-205ENST00000598209 SLC3A2P08195 630 aaKnown RBP16.5■□□□□ 0.23
UPF1-205ENST00000598209 HSPD1P10809 573 aaKnown RBP16.5■□□□□ 0.23
UPF1-205ENST00000598209 BCRP11274 1271 aa16.5■□□□□ 0.23
UPF1-205ENST00000598209 HOXA7P31268 230 aaPredicted RBP16.5■□□□□ 0.23
UPF1-205ENST00000598209 IRX3P78415 501 aaPredicted RBP16.5■□□□□ 0.23
UPF1-205ENST00000598209 LACTBP83111 547 aaPredicted RBP16.5■□□□□ 0.23
UPF1-205ENST00000598209 ICA1Q05084 483 aa16.5■□□□□ 0.23
UPF1-205ENST00000598209 KIF22Q14807 665 aa16.5■□□□□ 0.23
UPF1-205ENST00000598209 PKN2Q16513 984 aaKnown RBP16.5■□□□□ 0.23
UPF1-205ENST00000598209 OTOP1Q7RTM1 612 aa16.5■□□□□ 0.23
UPF1-205ENST00000598209 ABHD8Q96I13 439 aa16.5■□□□□ 0.23
UPF1-205ENST00000598209 EFCC1Q9HA90 598 aa16.5■□□□□ 0.23
UPF1-205ENST00000598209 LAMA4Q16363 1823 aa16.49■□□□□ 0.23
UPF1-205ENST00000598209 PRDM1O75626 825 aa16.49■□□□□ 0.23
UPF1-205ENST00000598209 FGAP02671 866 aa16.49■□□□□ 0.23
UPF1-205ENST00000598209 CTDSPL2Q05D32 466 aa16.49■□□□□ 0.23
UPF1-205ENST00000598209 PDE4BQ07343 736 aa16.49■□□□□ 0.23
UPF1-205ENST00000598209 ARHGEF6Q15052 776 aa16.49■□□□□ 0.23
UPF1-205ENST00000598209 SIAH1Q8IUQ4 282 aa16.49■□□□□ 0.23
UPF1-205ENST00000598209 ZNF444Q8N0Y2 327 aaPredicted RBP16.49■□□□□ 0.23
UPF1-205ENST00000598209 ARHGAP39Q9C0H5 1083 aa16.49■□□□□ 0.23
UPF1-205ENST00000598209 KANSL2Q9H9L4 492 aa16.49■□□□□ 0.23
UPF1-205ENST00000598209 ARHGEF10LQ9HCE6 1279 aa16.49■□□□□ 0.23
UPF1-205ENST00000598209 ZMYM6O95789 1325 aa16.48■□□□□ 0.23
UPF1-205ENST00000598209 ECM2O94769 699 aaPredicted RBP16.48■□□□□ 0.23
UPF1-205ENST00000598209 VCAM1P19320 739 aa16.48■□□□□ 0.23
UPF1-205ENST00000598209 IFFO2Q5TF58 517 aa16.48■□□□□ 0.23
UPF1-205ENST00000598209 FBXO46Q6PJ61 603 aaPredicted RBP16.48■□□□□ 0.23
UPF1-205ENST00000598209 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.48■□□□□ 0.23
UPF1-205ENST00000598209 ANAPC4Q9UJX5 808 aa16.48■□□□□ 0.23
UPF1-205ENST00000598209 DOCK3Q8IZD9 2030 aa16.48■□□□□ 0.23
UPF1-205ENST00000598209 EEF2P13639 858 aaKnown RBP16.47■□□□□ 0.23
UPF1-205ENST00000598209 GCLCP48506 637 aaPredicted RBP16.47■□□□□ 0.23
UPF1-205ENST00000598209 ATP2B2Q01814 1243 aa16.47■□□□□ 0.23
UPF1-205ENST00000598209 SKAP1Q86WV1 359 aa16.47■□□□□ 0.23
UPF1-205ENST00000598209 ANKRD13CQ8N6S4 541 aa16.47■□□□□ 0.23
UPF1-205ENST00000598209 P2RX7Q99572 595 aaKnown RBP16.47■□□□□ 0.23
UPF1-205ENST00000598209 SH2D4AQ9H788 454 aa16.47■□□□□ 0.23
UPF1-205ENST00000598209 TMX2Q9Y320 296 aa16.47■□□□□ 0.23
UPF1-205ENST00000598209 PARP14Q460N5 1801 aa16.47■□□□□ 0.23
UPF1-205ENST00000598209 USP17L15C9J2P7 530 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 USP17L13C9JLJ4 530 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 USP17L11C9JVI0 530 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 USP17L18D6R9N7 530 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 USP17L22D6RA61 530 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 USP17L17D6RBQ6 530 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 USP17L19D6RCP7 530 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 USP17L20D6RJB6 530 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 CAPN15O75808 1086 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 CTGFP29279 349 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 PSMC4P43686 418 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 HERVK_113P62684 666 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 USP17L24Q0WX57 530 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 FAM110CQ1W6H9 321 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 RPAP3Q9H6T3 665 aaPredicted RBP16.46■□□□□ 0.23
UPF1-205ENST00000598209 PTPN22Q9Y2R2 807 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 DDX52Q9Y2R4 599 aaKnown RBP eCLIP16.46■□□□□ 0.23
UPF1-205ENST00000598209 RLFQ13129 1914 aa16.46■□□□□ 0.23
UPF1-205ENST00000598209 IGKV6D-41A0A0C4DH26 115 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 TSPY3P0CV98 308 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 TSPY8P0CW00 308 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 CHMLP26374 656 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 FAM47AQ5JRC9 791 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 KIAA1755Q5JYT7 1200 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 CATSPERGQ6ZRH7 1159 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 TRIM47Q96LD4 638 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 IL25Q9H293 177 aa16.45■□□□□ 0.22
UPF1-205ENST00000598209 VCPKMTQ9H867 229 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms