RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 FOXD4L1Q9NU39 408 aa17.81■□□□□ 0.44
TRIM28-209ENST00000597423 MTMR4Q9NYA4 1195 aa17.81■□□□□ 0.44
TRIM28-209ENST00000597423 PLIN4Q96Q06 1357 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 CDK5RAP2Q96SN8 1893 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 GOLGA8AA7E2F4 631 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 NMT2O60551 498 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 NOVP48745 357 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 CCT2P78371 535 aaKnown RBP17.8■□□□□ 0.44
TRIM28-209ENST00000597423 HMGN5P82970 282 aaKnown RBP17.8■□□□□ 0.44
TRIM28-209ENST00000597423 SCRN1Q12765 414 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 EAPPQ56P03 285 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-209ENST00000597423 MIGA2Q7L4E1 593 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 FANCBQ8NB91 859 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 CTCFLQ8NI51 663 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-209ENST00000597423 NUP133Q8WUM0 1156 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 CEP95Q96GE4 821 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 ZNF341Q9BYN7 854 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 DNAJC18Q9H819 358 aa17.8■□□□□ 0.44
TRIM28-209ENST00000597423 RBM28Q9NW13 759 aaKnown RBP17.8■□□□□ 0.44
TRIM28-209ENST00000597423 CIZ1Q9ULV3 898 aaPredicted RBP17.8■□□□□ 0.44
TRIM28-209ENST00000597423 DDX60LQ5H9U9 1706 aaKnown RBP17.79■□□□□ 0.44
TRIM28-209ENST00000597423 IGKV6D-41A0A0C4DH26 115 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 FAM196BA6NMK8 535 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 LARGE1O95461 756 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 NF2P35240 595 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 GNAQP50148 359 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 RTN1Q16799 776 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 RCSD1Q6JBY9 416 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 KRT26Q7Z3Y9 468 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 MICU3Q86XE3 530 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 PNMA1Q8ND90 353 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 TMEM47Q9BQJ4 181 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 SENP2Q9HC62 589 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 NYAP2Q9P242 653 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 CLIP2Q9UDT6 1046 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 CLEC11AQ9Y240 323 aa17.79■□□□□ 0.44
TRIM28-209ENST00000597423 CTNND1O60716 968 aaKnown RBP17.78■□□□□ 0.44
TRIM28-209ENST00000597423 ASNSP08243 561 aa17.78■□□□□ 0.44
TRIM28-209ENST00000597423 PDCP20941 246 aa17.78■□□□□ 0.44
TRIM28-209ENST00000597423 CAP2P40123 477 aa17.78■□□□□ 0.44
TRIM28-209ENST00000597423 NBPF12Q5TAG4 269 aaPredicted RBP17.78■□□□□ 0.44
TRIM28-209ENST00000597423 CDC37L1Q7L3B6 337 aa17.78■□□□□ 0.44
TRIM28-209ENST00000597423 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.78■□□□□ 0.44
TRIM28-209ENST00000597423 SYNPO2Q9UMS6 1093 aa17.78■□□□□ 0.44
TRIM28-209ENST00000597423 HPS5Q9UPZ3 1129 aa17.78■□□□□ 0.44
TRIM28-209ENST00000597423 GH2P01242 217 aa17.77■□□□□ 0.44
TRIM28-209ENST00000597423 NUCB2P80303 420 aa17.77■□□□□ 0.44
TRIM28-209ENST00000597423 ATP2B2Q01814 1243 aa17.77■□□□□ 0.44
TRIM28-209ENST00000597423 RAB3GAP1Q15042 981 aa17.77■□□□□ 0.44
TRIM28-209ENST00000597423 USP48Q86UV5 1035 aa17.77■□□□□ 0.44
TRIM28-209ENST00000597423 FAM184AQ8NB25 1140 aa17.77■□□□□ 0.44
TRIM28-209ENST00000597423 MKL1Q969V6 931 aa17.77■□□□□ 0.44
TRIM28-209ENST00000597423 LZTS2Q9BRK4 669 aa17.77■□□□□ 0.44
TRIM28-209ENST00000597423 ARHGEF10LQ9HCE6 1279 aa17.77■□□□□ 0.44
TRIM28-209ENST00000597423 CHMP5Q9NZZ3 219 aa17.77■□□□□ 0.44
TRIM28-209ENST00000597423 SCAF8Q9UPN6 1271 aaKnown RBP17.77■□□□□ 0.44
TRIM28-209ENST00000597423 POTECB2RU33 542 aa17.76■□□□□ 0.43
TRIM28-209ENST00000597423 PPP1R12BO60237 982 aaPredicted RBP17.76■□□□□ 0.43
TRIM28-209ENST00000597423 GDF11O95390 407 aa17.76■□□□□ 0.43
TRIM28-209ENST00000597423 ICA1Q05084 483 aa17.76■□□□□ 0.43
TRIM28-209ENST00000597423 TROAPQ12815 778 aa17.76■□□□□ 0.43
TRIM28-209ENST00000597423 SEPT2Q15019 361 aa17.76■□□□□ 0.43
TRIM28-209ENST00000597423 TRIM22Q8IYM9 498 aa17.76■□□□□ 0.43
TRIM28-209ENST00000597423 SH2D4AQ9H788 454 aa17.76■□□□□ 0.43
TRIM28-209ENST00000597423 RRAGCQ9HB90 399 aa17.76■□□□□ 0.43
TRIM28-209ENST00000597423 NCOA5Q9HCD5 579 aaKnown RBP17.76■□□□□ 0.43
TRIM28-209ENST00000597423 NID2Q14112 1375 aa17.76■□□□□ 0.43
TRIM28-209ENST00000597423 PHF20L1A8MW92 1017 aa17.75■□□□□ 0.43
TRIM28-209ENST00000597423 GJB2P29033 226 aa17.75■□□□□ 0.43
TRIM28-209ENST00000597423 ADD1P35611 737 aaKnown RBP17.75■□□□□ 0.43
TRIM28-209ENST00000597423 AKAP17AQ02040 695 aaKnown RBP17.75■□□□□ 0.43
TRIM28-209ENST00000597423 CDAN1Q8IWY9 1227 aa17.75■□□□□ 0.43
TRIM28-209ENST00000597423 WASF1Q92558 559 aa17.75■□□□□ 0.43
TRIM28-209ENST00000597423 MYL10Q9BUA6 226 aa17.75■□□□□ 0.43
TRIM28-209ENST00000597423 ZNF112Q9UJU3 913 aa17.75■□□□□ 0.43
TRIM28-209ENST00000597423 ZBTB21Q9ULJ3 1066 aa17.75■□□□□ 0.43
TRIM28-209ENST00000597423 PARP1P09874 1014 aaKnown RBP17.74■□□□□ 0.43
TRIM28-209ENST00000597423 SLURP2P0DP57 97 aa17.74■□□□□ 0.43
TRIM28-209ENST00000597423 EEF2P13639 858 aaKnown RBP17.74■□□□□ 0.43
TRIM28-209ENST00000597423 SSRP1Q08945 709 aaKnown RBP17.74■□□□□ 0.43
TRIM28-209ENST00000597423 RAB11FIP4Q86YS3 637 aa17.74■□□□□ 0.43
TRIM28-209ENST00000597423 CCDC144CPQ8IYA2 1237 aa17.74■□□□□ 0.43
TRIM28-209ENST00000597423 SMARCC2Q8TAQ2 1214 aa17.74■□□□□ 0.43
TRIM28-209ENST00000597423 PICK1Q9NRD5 415 aa17.74■□□□□ 0.43
TRIM28-209ENST00000597423 PTPDC1A2A3K4 754 aa17.73■□□□□ 0.43
TRIM28-209ENST00000597423 IFNAR1P17181 557 aa17.73■□□□□ 0.43
TRIM28-209ENST00000597423 RXRAP19793 462 aa17.73■□□□□ 0.43
TRIM28-209ENST00000597423 GRM4Q14833 912 aa17.73■□□□□ 0.43
TRIM28-209ENST00000597423 PRAMEF18Q5VWM3 479 aa17.73■□□□□ 0.43
TRIM28-209ENST00000597423 LDHDQ86WU2 507 aa17.73■□□□□ 0.43
TRIM28-209ENST00000597423 NSUN7Q8NE18 718 aaKnown RBP17.73■□□□□ 0.43
TRIM28-209ENST00000597423 RBM27Q9P2N5 1060 aaKnown RBP17.73■□□□□ 0.43
TRIM28-209ENST00000597423 SCN4AP35499 1836 aa17.72■□□□□ 0.43
TRIM28-209ENST00000597423 SRCAPQ6ZRS2 3230 aa17.72■□□□□ 0.43
TRIM28-209ENST00000597423 ADM5C9JUS6 153 aa17.72■□□□□ 0.43
TRIM28-209ENST00000597423 SMARCA1P28370 1054 aa17.72■□□□□ 0.43
TRIM28-209ENST00000597423 CDC27P30260 824 aa17.72■□□□□ 0.43
TRIM28-209ENST00000597423 GUCY1A2P33402 732 aa17.72■□□□□ 0.43
TRIM28-209ENST00000597423 IREB2P48200 963 aaKnown RBP17.72■□□□□ 0.43
TRIM28-209ENST00000597423 ST3GAL1Q11201 340 aa17.72■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms