RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 FKTNO75072 461 aa13.2□□□□□ -0.3
LIG1-211ENST00000596457 ECM2O94769 699 aaPredicted RBP13.2□□□□□ -0.3
LIG1-211ENST00000596457 SLC3A2P08195 630 aaKnown RBP13.2□□□□□ -0.3
LIG1-211ENST00000596457 ATP2B2Q01814 1243 aa13.2□□□□□ -0.3
LIG1-211ENST00000596457 CRHR2Q13324 411 aa13.2□□□□□ -0.3
LIG1-211ENST00000596457 ANKRD23Q86SG2 305 aa13.2□□□□□ -0.3
LIG1-211ENST00000596457 ZNF444Q8N0Y2 327 aaPredicted RBP13.2□□□□□ -0.3
LIG1-211ENST00000596457 ZNF296Q8WUU4 475 aaPredicted RBP13.2□□□□□ -0.3
LIG1-211ENST00000596457 TMOD4Q9NZQ9 345 aa13.2□□□□□ -0.3
LIG1-211ENST00000596457 FGAP02671 866 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 CHMLP26374 656 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 GUCY1A2P33402 732 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 HAND2P61296 217 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 PDE4BQ07343 736 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 MOGSQ13724 837 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 GPAT2Q6NUI2 795 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 CLEC10AQ8IUN9 316 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 ACER1Q8TDN7 264 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 RUFY2Q8WXA3 655 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 WDR18Q9BV38 432 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 INCENPQ9NQS7 918 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 TOMM22Q9NS69 142 aa13.19□□□□□ -0.3
LIG1-211ENST00000596457 RAD21O60216 631 aa13.18□□□□□ -0.3
LIG1-211ENST00000596457 RASA1P20936 1047 aa13.18□□□□□ -0.3
LIG1-211ENST00000596457 BACE1P56817 501 aa13.18□□□□□ -0.3
LIG1-211ENST00000596457 ALX1Q15699 326 aa13.18□□□□□ -0.3
LIG1-211ENST00000596457 FAM47AQ5JRC9 791 aa13.18□□□□□ -0.3
LIG1-211ENST00000596457 TREML2Q5T2D2 321 aa13.18□□□□□ -0.3
LIG1-211ENST00000596457 USP17L2Q6R6M4 530 aa13.18□□□□□ -0.3
LIG1-211ENST00000596457 TMEM179Q6ZVK1 233 aa13.18□□□□□ -0.3
LIG1-211ENST00000596457 CCDC17Q96LX7 622 aa13.18□□□□□ -0.3
LIG1-211ENST00000596457 ZNF287Q9HBT7 754 aa13.18□□□□□ -0.3
LIG1-211ENST00000596457 ZCCHC17Q9NP64 241 aaKnown RBP13.18□□□□□ -0.3
LIG1-211ENST00000596457 LOC285556D6RIA3 1793 aa13.17□□□□□ -0.3
LIG1-211ENST00000596457 C19orf81C9J6K1 198 aa13.17□□□□□ -0.3
LIG1-211ENST00000596457 CYP2C8P10632 490 aa13.17□□□□□ -0.3
LIG1-211ENST00000596457 ICA1Q05084 483 aa13.17□□□□□ -0.3
LIG1-211ENST00000596457 ARHGEF6Q15052 776 aa13.17□□□□□ -0.3
LIG1-211ENST00000596457 RRP12Q5JTH9 1297 aaKnown RBP13.17□□□□□ -0.3
LIG1-211ENST00000596457 PROCA1Q8NCQ7 364 aaPredicted RBP13.17□□□□□ -0.3
LIG1-211ENST00000596457 IL25Q9H293 177 aa13.17□□□□□ -0.3
LIG1-211ENST00000596457 ARHGEF10LQ9HCE6 1279 aa13.17□□□□□ -0.3
LIG1-211ENST00000596457 CPA4Q9UI42 421 aa13.17□□□□□ -0.3
LIG1-211ENST00000596457 AGTPBP1Q9UPW5 1226 aa13.17□□□□□ -0.3
LIG1-211ENST00000596457 ROBO3Q96MS0 1386 aa13.17□□□□□ -0.3
LIG1-211ENST00000596457 TSPY3P0CV98 308 aa13.16□□□□□ -0.3
LIG1-211ENST00000596457 TSPY8P0CW00 308 aa13.16□□□□□ -0.3
LIG1-211ENST00000596457 OSBPP22059 807 aa13.16□□□□□ -0.3
LIG1-211ENST00000596457 TFAP4Q01664 338 aa13.16□□□□□ -0.3
LIG1-211ENST00000596457 PABPC4Q13310 644 aaKnown RBP eCLIP13.16□□□□□ -0.3
LIG1-211ENST00000596457 SH3D19Q5HYK7 790 aa13.16□□□□□ -0.3
LIG1-211ENST00000596457 ERO1AQ96HE7 468 aa13.16□□□□□ -0.3
LIG1-211ENST00000596457 PARK7Q99497 189 aaKnown RBP13.16□□□□□ -0.3
LIG1-211ENST00000596457 EMILIN3Q9NT22 766 aa13.16□□□□□ -0.3
LIG1-211ENST00000596457 TAOK2Q9UL54 1235 aa13.16□□□□□ -0.3
LIG1-211ENST00000596457 MYH4Q9Y623 1939 aa13.15□□□□□ -0.3
LIG1-211ENST00000596457 A0A1W2PRG0 241 aa13.15□□□□□ -0.3
LIG1-211ENST00000596457 ZNF213O14771 459 aa13.15□□□□□ -0.3
LIG1-211ENST00000596457 RANBP6O60518 1105 aaKnown RBP13.15□□□□□ -0.3
LIG1-211ENST00000596457 TLR2O60603 784 aa13.15□□□□□ -0.3
LIG1-211ENST00000596457 EEF2P13639 858 aaKnown RBP13.15□□□□□ -0.3
LIG1-211ENST00000596457 USP14P54578 494 aa13.15□□□□□ -0.3
LIG1-211ENST00000596457 SP3Q02447 781 aa13.15□□□□□ -0.3
LIG1-211ENST00000596457 FBXO46Q6PJ61 603 aaPredicted RBP13.15□□□□□ -0.3
LIG1-211ENST00000596457 SAMD1Q6SPF0 538 aaPredicted RBP13.15□□□□□ -0.3
LIG1-211ENST00000596457 CD99L2Q8TCZ2 262 aa13.15□□□□□ -0.3
LIG1-211ENST00000596457 SMCR8Q8TEV9 937 aaPredicted RBP13.15□□□□□ -0.3
LIG1-211ENST00000596457 DSCC1Q9BVC3 393 aa13.15□□□□□ -0.3
LIG1-211ENST00000596457 KANSL2Q9H9L4 492 aa13.15□□□□□ -0.3
LIG1-211ENST00000596457 TACC3Q9Y6A5 838 aa13.15□□□□□ -0.3
LIG1-211ENST00000596457 RAD50Q92878 1312 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 TSPY2A6NKD2 308 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 IRX3P78415 501 aaPredicted RBP13.14□□□□□ -0.31
LIG1-211ENST00000596457 PTH1RQ03431 593 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 BMP2KLQ5H9B9 411 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 MFSD6Q6ZSS7 791 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 CHMP4CQ96CF2 233 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 KIAA1683Q9H0B3 1180 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 CLIP2Q9UDT6 1046 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 CTNNA3Q9UI47 895 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 ANAPC4Q9UJX5 808 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 PNMA3Q9UL41 463 aa13.14□□□□□ -0.31
LIG1-211ENST00000596457 SGSM2O43147 1006 aa13.13□□□□□ -0.31
LIG1-211ENST00000596457 FXR1P51114 621 aaKnown RBP eCLIP13.13□□□□□ -0.31
LIG1-211ENST00000596457 IMMTQ16891 758 aaKnown RBP13.13□□□□□ -0.31
LIG1-211ENST00000596457 AKNAD1Q5T1N1 836 aa13.13□□□□□ -0.31
LIG1-211ENST00000596457 CASC1Q6TDU7 716 aa13.13□□□□□ -0.31
LIG1-211ENST00000596457 KIAA1211Q6ZU35 1233 aa13.13□□□□□ -0.31
LIG1-211ENST00000596457 SIAH1Q8IUQ4 282 aa13.13□□□□□ -0.31
LIG1-211ENST00000596457 SPICE1Q8N0Z3 855 aa13.13□□□□□ -0.31
LIG1-211ENST00000596457 P2RX7Q99572 595 aaKnown RBP13.13□□□□□ -0.31
LIG1-211ENST00000596457 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.13□□□□□ -0.31
LIG1-211ENST00000596457 ASCC2Q9H1I8 757 aaPredicted RBP13.13□□□□□ -0.31
LIG1-211ENST00000596457 RPAP3Q9H6T3 665 aaPredicted RBP13.13□□□□□ -0.31
LIG1-211ENST00000596457 SH2D4AQ9H788 454 aa13.13□□□□□ -0.31
LIG1-211ENST00000596457 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.13□□□□□ -0.31
LIG1-211ENST00000596457 SLC45A1Q9Y2W3 748 aa13.13□□□□□ -0.31
LIG1-211ENST00000596457 GREB1LQ9C091 1923 aaPredicted RBP13.13□□□□□ -0.31
LIG1-211ENST00000596457 ZSWIM8A7E2V4 1837 aa13.13□□□□□ -0.31
LIG1-211ENST00000596457 LAMA4Q16363 1823 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms