RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 CLIC6Q96NY7 704 aa22.67■■□□□ 1.22
CLIP3-206ENST00000593074 ALDH1B1P30837 517 aa22.66■■□□□ 1.22
CLIP3-206ENST00000593074 CERS3Q8IU89 383 aa22.66■■□□□ 1.22
CLIP3-206ENST00000593074 MORC2Q9Y6X9 1032 aaPredicted RBP22.66■■□□□ 1.22
CLIP3-206ENST00000593074 BECN2A8MW95 431 aa22.66■■□□□ 1.22
CLIP3-206ENST00000593074 DPCR1Q3MIW9 517 aa22.66■■□□□ 1.22
CLIP3-206ENST00000593074 TBC1D22AQ8WUA7 517 aa22.66■■□□□ 1.22
CLIP3-206ENST00000593074 DDX60LQ5H9U9 1706 aaKnown RBP22.65■■□□□ 1.22
CLIP3-206ENST00000593074 TSPY2A6NKD2 308 aa22.65■■□□□ 1.22
CLIP3-206ENST00000593074 ZRSR1Q15695 479 aaKnown RBP22.65■■□□□ 1.22
CLIP3-206ENST00000593074 RCSD1Q6JBY9 416 aa22.65■■□□□ 1.22
CLIP3-206ENST00000593074 CTCFLQ8NI51 663 aaPredicted RBP22.65■■□□□ 1.22
CLIP3-206ENST00000593074 RTFDC1Q9BY42 306 aaPredicted RBP22.65■■□□□ 1.22
CLIP3-206ENST00000593074 VPS54Q9P1Q0 977 aa22.65■■□□□ 1.22
CLIP3-206ENST00000593074 FBXO2Q9UK22 296 aaPredicted RBP22.65■■□□□ 1.22
CLIP3-206ENST00000593074 PTPREP23469 700 aa22.64■■□□□ 1.22
CLIP3-206ENST00000593074 MFSD14BQ5SR56 506 aa22.64■■□□□ 1.22
CLIP3-206ENST00000593074 AMOTL1Q8IY63 956 aa22.64■■□□□ 1.22
CLIP3-206ENST00000593074 MRFAP1L1Q96HT8 127 aa22.64■■□□□ 1.22
CLIP3-206ENST00000593074 TUBE1Q9UJT0 475 aa22.64■■□□□ 1.22
CLIP3-206ENST00000593074 V9GY48 417 aaPredicted RBP22.64■■□□□ 1.22
CLIP3-206ENST00000593074 CDK5RAP2Q96SN8 1893 aa22.64■■□□□ 1.22
CLIP3-206ENST00000593074 NLRP12P59046 1061 aa22.64■■□□□ 1.21
CLIP3-206ENST00000593074 SLF2Q8IX21 1173 aa22.64■■□□□ 1.21
CLIP3-206ENST00000593074 AOPEPQ8N6M6 819 aa22.64■■□□□ 1.21
CLIP3-206ENST00000593074 CEP131Q9UPN4 1083 aa22.64■■□□□ 1.21
CLIP3-206ENST00000593074 PCDHB6Q9Y5E3 794 aa22.64■■□□□ 1.21
CLIP3-206ENST00000593074 KRT2P35908 639 aa22.63■■□□□ 1.21
CLIP3-206ENST00000593074 TGFBRAP1Q8WUH2 860 aa22.63■■□□□ 1.21
CLIP3-206ENST00000593074 COA1Q9GZY4 146 aa22.63■■□□□ 1.21
CLIP3-206ENST00000593074 SPTLC3Q9NUV7 552 aa22.63■■□□□ 1.21
CLIP3-206ENST00000593074 KCNH3Q9ULD8 1083 aa22.63■■□□□ 1.21
CLIP3-206ENST00000593074 FAM205AQ6ZU69 1335 aa22.63■■□□□ 1.21
CLIP3-206ENST00000593074 GPR75-ASB3A0A0A6YYF3 556 aa22.62■■□□□ 1.21
CLIP3-206ENST00000593074 RIMBP2O15034 1052 aa22.62■■□□□ 1.21
CLIP3-206ENST00000593074 ELOA2Q8IYF1 753 aaPredicted RBP22.62■■□□□ 1.21
CLIP3-206ENST00000593074 SRBD1Q8N5C6 995 aaKnown RBP22.62■■□□□ 1.21
CLIP3-206ENST00000593074 ZNF579Q8NAF0 562 aaKnown RBP22.62■■□□□ 1.21
CLIP3-206ENST00000593074 MASTLQ96GX5 879 aa22.62■■□□□ 1.21
CLIP3-206ENST00000593074 TMX4Q9H1E5 349 aaPredicted RBP22.62■■□□□ 1.21
CLIP3-206ENST00000593074 PTGS1P23219 599 aa22.62■■□□□ 1.21
CLIP3-206ENST00000593074 BTDP43251 543 aa22.62■■□□□ 1.21
CLIP3-206ENST00000593074 TERF1P54274 439 aa22.62■■□□□ 1.21
CLIP3-206ENST00000593074 DGKHQ86XP1 1220 aa22.62■■□□□ 1.21
CLIP3-206ENST00000593074 ANKS1AQ92625 1134 aa22.62■■□□□ 1.21
CLIP3-206ENST00000593074 FAM163AQ96GL9 167 aaPredicted RBP22.62■■□□□ 1.21
CLIP3-206ENST00000593074 ZC3H12CQ9C0D7 883 aaKnown RBP22.62■■□□□ 1.21
CLIP3-206ENST00000593074 CABP5Q9NP86 173 aa22.62■■□□□ 1.21
CLIP3-206ENST00000593074 ANKRD31Q8N7Z5 1873 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 NRXN2Q9P2S2 1712 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 NOLC1Q14978 699 aaKnown RBP eCLIP22.61■■□□□ 1.21
CLIP3-206ENST00000593074 NPY5RQ15761 445 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 MSL1Q68DK7 614 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 KIAA1524Q8TCG1 905 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 CLIP2Q9UDT6 1046 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 hCG_1642624A0A1W2PR95 340 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 PLCG2P16885 1265 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 TFAP4Q01664 338 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 SLC4A8Q2Y0W8 1093 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 KRBA2Q6ZNG9 492 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 TNFRSF25Q93038 417 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 IL17RBQ9NRM6 502 aa22.61■■□□□ 1.21
CLIP3-206ENST00000593074 SRPRBQ9Y5M8 271 aaKnown RBP22.61■■□□□ 1.21
CLIP3-206ENST00000593074 GTF2IP78347 998 aa22.6■■□□□ 1.21
CLIP3-206ENST00000593074 DPP8Q6V1X1 898 aaPredicted RBP22.6■■□□□ 1.21
CLIP3-206ENST00000593074 CCDC186Q7Z3E2 898 aa22.6■■□□□ 1.21
CLIP3-206ENST00000593074 DRC7Q8IY82 874 aa22.6■■□□□ 1.21
CLIP3-206ENST00000593074 FBXW7Q969H0 707 aa22.6■■□□□ 1.21
CLIP3-206ENST00000593074 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.6■■□□□ 1.21
CLIP3-206ENST00000593074 KIF5BP33176 963 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 LONRF3Q496Y0 759 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 CCDC178Q5BJE1 867 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 METTL16Q86W50 562 aaKnown RBP22.59■■□□□ 1.21
CLIP3-206ENST00000593074 DYNLL2Q96FJ2 89 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 BRMS1Q9HCU9 246 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 TCP11L1Q9NUJ3 509 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 PYCARDQ9ULZ3 195 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 BIN1O00499 593 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 GRIN1Q05586 938 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 MAPKAPK5Q8IW41 473 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 KAT14Q9H8E8 782 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 MKNK2Q9HBH9 465 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 FAM13BQ9NYF5 915 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 NRBP1Q9UHY1 535 aa22.59■■□□□ 1.21
CLIP3-206ENST00000593074 FAM205CA6NFA0 338 aa22.58■■□□□ 1.21
CLIP3-206ENST00000593074 TRIM75PA6NK02 468 aa22.58■■□□□ 1.21
CLIP3-206ENST00000593074 SCG2P13521 617 aa22.58■■□□□ 1.21
CLIP3-206ENST00000593074 EARS2Q5JPH6 523 aaKnown RBP22.58■■□□□ 1.21
CLIP3-206ENST00000593074 TEX11Q8IYF3 940 aa22.58■■□□□ 1.21
CLIP3-206ENST00000593074 PNOCQ13519 176 aa22.58■■□□□ 1.2
CLIP3-206ENST00000593074 PFKFB3Q16875 520 aaPredicted RBP22.58■■□□□ 1.2
CLIP3-206ENST00000593074 OLFM4Q6UX06 510 aa22.58■■□□□ 1.2
CLIP3-206ENST00000593074 CNNM3Q8NE01 707 aa22.58■■□□□ 1.2
CLIP3-206ENST00000593074 ZNF622Q969S3 477 aaKnown RBP eCLIP22.58■■□□□ 1.2
CLIP3-206ENST00000593074 GAKO14976 1311 aa22.57■■□□□ 1.2
CLIP3-206ENST00000593074 PNMA1Q8ND90 353 aa22.57■■□□□ 1.2
CLIP3-206ENST00000593074 SUGT1Q9Y2Z0 365 aa22.57■■□□□ 1.2
CLIP3-206ENST00000593074 BMP15O95972 392 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 PLCD1P51178 756 aa22.56■■□□□ 1.2
CLIP3-206ENST00000593074 MDM2Q00987 491 aaPredicted RBP22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms