RNA–Protein interactions for RNA: ENST00000592533.5

ZNF540-210, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 2 BASIC

Gene ZNF540, Length 3,147 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-210ENST00000592533 UBXN4Q92575 508 aa13.24□□□□□ -0.29
ZNF540-210ENST00000592533 RIOK1Q9BRS2 568 aaKnown RBP13.24□□□□□ -0.29
ZNF540-210ENST00000592533 BRIP1Q9BX63 1249 aa13.24□□□□□ -0.29
ZNF540-210ENST00000592533 CCDC87Q9NVE4 849 aa13.24□□□□□ -0.29
ZNF540-210ENST00000592533 ARGLU1Q9NWB6 273 aaPredicted RBP13.24□□□□□ -0.29
ZNF540-210ENST00000592533 MYH8P13535 1937 aa13.24□□□□□ -0.29
ZNF540-210ENST00000592533 FECHP22830 423 aa13.24□□□□□ -0.29
ZNF540-210ENST00000592533 KRT2P35908 639 aa13.24□□□□□ -0.29
ZNF540-210ENST00000592533 SPATA1Q5VX52 437 aa13.24□□□□□ -0.29
ZNF540-210ENST00000592533 GSDMAQ96QA5 445 aa13.24□□□□□ -0.29
ZNF540-210ENST00000592533 CDC5LQ99459 802 aaKnown RBP13.24□□□□□ -0.29
ZNF540-210ENST00000592533 CABP5Q9NP86 173 aa13.24□□□□□ -0.29
ZNF540-210ENST00000592533 MRFAP1Q9Y605 127 aa13.24□□□□□ -0.29
ZNF540-210ENST00000592533 CALM1P0DP23 149 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 CALM2P0DP24 149 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 CALM3P0DP25 149 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 HSPA2P54652 639 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 CHRNDQ07001 517 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 USP49Q70CQ1 688 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 ENAHQ8N8S7 591 aaPredicted RBP13.23□□□□□ -0.29
ZNF540-210ENST00000592533 ZSCAN10Q96SZ4 725 aaPredicted RBP13.23□□□□□ -0.29
ZNF540-210ENST00000592533 LRP2BPQ9P2M1 347 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 A0A087X0B3 334 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 MAGEB6P1A0A0J9YX57 407 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 PNMA6AP0CW24 399 aaPredicted RBP13.23□□□□□ -0.29
ZNF540-210ENST00000592533 CDK11BP21127 795 aaKnown RBP13.23□□□□□ -0.29
ZNF540-210ENST00000592533 DPYDQ12882 1025 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 TMED8Q6PL24 325 aaPredicted RBP13.23□□□□□ -0.29
ZNF540-210ENST00000592533 TOGARAM2Q6ZUX3 1019 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 RSRC2Q7L4I2 434 aaKnown RBP13.23□□□□□ -0.29
ZNF540-210ENST00000592533 GRAMD1CQ8IYS0 662 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 MNS1Q8NEH6 495 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 SAMSN1Q9NSI8 373 aaKnown RBP13.23□□□□□ -0.29
ZNF540-210ENST00000592533 TAF1P21675 1872 aa13.23□□□□□ -0.29
ZNF540-210ENST00000592533 EXOC5O00471 708 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 DDAH1O94760 285 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 URI1O94763 535 aaPredicted RBP13.22□□□□□ -0.29
ZNF540-210ENST00000592533 CYP7A1P22680 504 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 NPY5RQ15761 445 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 ZNF827Q17R98 1081 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 TRMT44Q8IYL2 757 aaKnown RBP13.22□□□□□ -0.29
ZNF540-210ENST00000592533 MIGA1Q8NAN2 632 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 PAGE5Q96GU1 130 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 CASQ1P31415 396 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 CMTR1Q8N1G2 835 aaKnown RBP13.22□□□□□ -0.29
ZNF540-210ENST00000592533 NUP133Q8WUM0 1156 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 CTAGE1Q96RT6 745 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 WDR24Q96S15 920 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 UBXN6Q9BZV1 441 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 TOMM22Q9NS69 142 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 ADD3Q9UEY8 706 aaKnown RBP13.22□□□□□ -0.29
ZNF540-210ENST00000592533 ITIH6Q6UXX5 1313 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 AKR1B15C9JRZ8 316 aaPredicted RBP13.22□□□□□ -0.29
ZNF540-210ENST00000592533 TROAPQ12815 778 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 CARD6Q9BX69 1037 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 SYNRGQ9UMZ2 1314 aa13.22□□□□□ -0.29
ZNF540-210ENST00000592533 MYH1P12882 1939 aa13.21□□□□□ -0.29
ZNF540-210ENST00000592533 PDS5AQ29RF7 1337 aaKnown RBP13.21□□□□□ -0.29
ZNF540-210ENST00000592533 ADKP55263 362 aaKnown RBP13.21□□□□□ -0.29
ZNF540-210ENST00000592533 AKAP17AQ02040 695 aaKnown RBP13.21□□□□□ -0.29
ZNF540-210ENST00000592533 GPR161Q8N6U8 529 aaKnown RBP13.21□□□□□ -0.29
ZNF540-210ENST00000592533 CRKLP46109 303 aaKnown RBP13.21□□□□□ -0.3
ZNF540-210ENST00000592533 ATP2C1P98194 919 aaPredicted RBP13.21□□□□□ -0.3
ZNF540-210ENST00000592533 EARS2Q5JPH6 523 aaKnown RBP13.21□□□□□ -0.3
ZNF540-210ENST00000592533 TAF3Q5VWG9 929 aa13.21□□□□□ -0.3
ZNF540-210ENST00000592533 TMTC3Q6ZXV5 915 aa13.21□□□□□ -0.3
ZNF540-210ENST00000592533 CATIPQ7Z7H3 387 aa13.21□□□□□ -0.3
ZNF540-210ENST00000592533 SYMPKQ92797 1274 aaKnown RBP13.21□□□□□ -0.3
ZNF540-210ENST00000592533 PYM1Q9BRP8 204 aaKnown RBP13.21□□□□□ -0.3
ZNF540-210ENST00000592533 VPS54Q9P1Q0 977 aa13.21□□□□□ -0.3
ZNF540-210ENST00000592533 AHDC1Q5TGY3 1603 aaPredicted RBP13.21□□□□□ -0.3
ZNF540-210ENST00000592533 FAM205CA6NFA0 338 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 PPP1R3GB7ZBB8 358 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 ZBTB22O15209 634 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 CD44P16070 742 aaKnown RBP13.2□□□□□ -0.3
ZNF540-210ENST00000592533 TRAPPC10P48553 1259 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 GNG11P61952 73 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 UBE4AQ14139 1066 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 PTPN21Q16825 1174 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 TMCO3Q6UWJ1 677 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 PDILTQ8N807 584 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 SDR42E1Q8WUS8 393 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 CCDC51Q96ER9 411 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 GNL3LQ9NVN8 582 aaKnown RBP13.2□□□□□ -0.3
ZNF540-210ENST00000592533 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.2□□□□□ -0.3
ZNF540-210ENST00000592533 COL24A1Q17RW2 1714 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 CNTNAP5Q8WYK1 1306 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 ZNF335Q9H4Z2 1342 aaPredicted RBP13.2□□□□□ -0.3
ZNF540-210ENST00000592533 ORC4O43929 436 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 CCDC175P0C221 793 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 E2F4Q16254 413 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 ZNF771Q7L3S4 317 aaPredicted RBP13.2□□□□□ -0.3
ZNF540-210ENST00000592533 CCDC82Q8N4S0 544 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 DHX58Q96C10 678 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 EPSTI1Q96J88 318 aa13.2□□□□□ -0.3
ZNF540-210ENST00000592533 CDCA7Q9BWT1 371 aaPredicted RBP13.2□□□□□ -0.3
ZNF540-210ENST00000592533 NPHP1O15259 732 aa13.19□□□□□ -0.3
ZNF540-210ENST00000592533 PLA2G4AP47712 749 aa13.19□□□□□ -0.3
ZNF540-210ENST00000592533 IFIT1BQ5T764 474 aaKnown RBP13.19□□□□□ -0.3
ZNF540-210ENST00000592533 RABGGTAQ92696 567 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms