RNA–Protein interactions for RNA: ENST00000592244.1

LIG3-214, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 440 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-214ENST00000592244 SH3TC2Q8TF17 1288 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 STRBPQ96SI9 672 aaKnown RBP13.16□□□□□ -0.3
LIG3-214ENST00000592244 PUS7LQ9H0K6 701 aaKnown RBP13.16□□□□□ -0.3
LIG3-214ENST00000592244 EMILIN3Q9NT22 766 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 MORF4L1Q9UBU8 362 aa13.16□□□□□ -0.3
LIG3-214ENST00000592244 SLC3A2P08195 630 aaKnown RBP13.15□□□□□ -0.3
LIG3-214ENST00000592244 MAPK4P31152 587 aa13.15□□□□□ -0.3
LIG3-214ENST00000592244 TDO2P48775 406 aa13.15□□□□□ -0.3
LIG3-214ENST00000592244 FLT3LGP49771 235 aa13.15□□□□□ -0.3
LIG3-214ENST00000592244 SEPT2Q15019 361 aa13.15□□□□□ -0.3
LIG3-214ENST00000592244 C16orf86Q6ZW13 317 aa13.15□□□□□ -0.3
LIG3-214ENST00000592244 TICAM2Q86XR7 235 aa13.15□□□□□ -0.3
LIG3-214ENST00000592244 PXYLP1Q8TE99 480 aa13.15□□□□□ -0.3
LIG3-214ENST00000592244 LPAR1Q92633 364 aa13.15□□□□□ -0.3
LIG3-214ENST00000592244 P2RX7Q99572 595 aaKnown RBP13.15□□□□□ -0.3
LIG3-214ENST00000592244 MKNK2Q9HBH9 465 aa13.15□□□□□ -0.3
LIG3-214ENST00000592244 FOCADQ5VW36 1801 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 GPAA1O43292 621 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 ADCY3O60266 1144 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 CYP2D6P10635 497 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 CTGFP29279 349 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 CDK8P49336 464 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 ICA1Q05084 483 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 SHROOM1Q2M3G4 852 aaPredicted RBP13.14□□□□□ -0.31
LIG3-214ENST00000592244 SLFNL1Q499Z3 407 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 SBK1Q52WX2 424 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 CTR9Q6PD62 1173 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 PI4K2BQ8TCG2 481 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 SOCS4Q8WXH5 440 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 EVI5LQ96CN4 794 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 KANSL2Q9H9L4 492 aa13.14□□□□□ -0.31
LIG3-214ENST00000592244 MYO5AQ9Y4I1 1855 aaKnown RBP13.13□□□□□ -0.31
LIG3-214ENST00000592244 POTEFA5A3E0 1075 aa13.13□□□□□ -0.31
LIG3-214ENST00000592244 PATL2C9JE40 543 aaKnown RBP13.13□□□□□ -0.31
LIG3-214ENST00000592244 MYCP01106 439 aaPredicted RBP13.13□□□□□ -0.31
LIG3-214ENST00000592244 VCAM1P19320 739 aa13.13□□□□□ -0.31
LIG3-214ENST00000592244 CATSPERGQ6ZRH7 1159 aa13.13□□□□□ -0.31
LIG3-214ENST00000592244 TRMT44Q8IYL2 757 aaKnown RBP13.13□□□□□ -0.31
LIG3-214ENST00000592244 ACER1Q8TDN7 264 aa13.13□□□□□ -0.31
LIG3-214ENST00000592244 OSBP2Q969R2 916 aa13.13□□□□□ -0.31
LIG3-214ENST00000592244 DYNLL2Q96FJ2 89 aa13.13□□□□□ -0.31
LIG3-214ENST00000592244 PAGR1Q9BTK6 254 aa13.13□□□□□ -0.31
LIG3-214ENST00000592244 HOXC10Q9NYD6 342 aa13.13□□□□□ -0.31
LIG3-214ENST00000592244 STAP2Q9UGK3 403 aa13.13□□□□□ -0.31
LIG3-214ENST00000592244 RABGAP1Q9Y3P9 1069 aa13.13□□□□□ -0.31
LIG3-214ENST00000592244 MYH1P12882 1939 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 GSG1L2A8MUP6 293 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 MINDY4BA8MYZ0 360 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 ERVK-9P63128 1117 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 ERVK-24P63145 666 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 SLC44A5Q8NCS7 719 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 NUDT12Q9BQG2 462 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 TANGO6Q9C0B7 1094 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 RNF208Q9H0X6 261 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 RPAP3Q9H6T3 665 aaPredicted RBP13.12□□□□□ -0.31
LIG3-214ENST00000592244 GOPCQ9HD26 462 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 GABRQQ9UN88 632 aa13.12□□□□□ -0.31
LIG3-214ENST00000592244 PHIPQ8WWQ0 1821 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 CHGBP05060 677 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 GJB1P08034 283 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 CCL5P13501 91 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 AKR1B1P15121 316 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 EN2P19622 333 aaPredicted RBP13.11□□□□□ -0.31
LIG3-214ENST00000592244 GUCY1A2P33402 732 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 PDE1AP54750 535 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 ATP2B2Q01814 1243 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 PDE4BQ07343 736 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 COG2Q14746 738 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 PPP4R3BQ5MIZ7 849 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 LBX2Q6XYB7 198 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 ZNF444Q8N0Y2 327 aaPredicted RBP13.11□□□□□ -0.31
LIG3-214ENST00000592244 MB21D1Q8N884 522 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 OTUD7AQ8TE49 926 aaPredicted RBP13.11□□□□□ -0.31
LIG3-214ENST00000592244 NAPBQ9H115 298 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 RBPJLQ9UBG7 517 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 TMX2Q9Y320 296 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 IVNS1ABPQ9Y6Y0 642 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 LOC285556D6RIA3 1793 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 SIPA1L1O43166 1804 aa13.11□□□□□ -0.31
LIG3-214ENST00000592244 HTTP42858 3142 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 CYP2D7A0A087X1C5 515 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 HMGCRP04035 888 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 INHAP05111 366 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 XRCC5P13010 732 aaKnown RBP13.1□□□□□ -0.31
LIG3-214ENST00000592244 ZMYM1Q5SVZ6 1142 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 PLEKHH3Q7Z736 793 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 SMC5Q8IY18 1101 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 LNPKQ9C0E8 428 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 VCPKMTQ9H867 229 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 SUPT16HQ9Y5B9 1047 aaKnown RBP13.1□□□□□ -0.31
LIG3-214ENST00000592244 ATAD5Q96QE3 1844 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 NAV1Q8NEY1 1877 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 CDK5RAP2Q96SN8 1893 aa13.1□□□□□ -0.31
LIG3-214ENST00000592244 PTPRFP10586 1907 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 TRIM6-TRIM34B2RNG4 842 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 M0R2C6 588 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 WDR46O15213 610 aaKnown RBP13.09□□□□□ -0.31
LIG3-214ENST00000592244 ELNP15502 786 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 RGS2P41220 211 aa13.09□□□□□ -0.31
LIG3-214ENST00000592244 GJA8P48165 433 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms