RNA–Protein interactions for RNA: ENST00000591475.5

VPS4B-206, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 2,008 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-206ENST00000591475 FOXN1O15353 648 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 ZNF18P17022 549 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 PPP2R3AQ06190 1150 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 NT5DC1Q5TFE4 455 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 STK11IPQ8N1F8 1099 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 TC2NQ8N9U0 490 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 TRIML1Q8N9V2 468 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 CDC5LQ99459 802 aaKnown RBP12.37□□□□□ -0.43
VPS4B-206ENST00000591475 NFE2L3Q9Y4A8 694 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 MRFAP1Q9Y605 127 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 DOCK2Q92608 1830 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 MYH6P13533 1939 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 IFIT3O14879 490 aaKnown RBP12.37□□□□□ -0.43
VPS4B-206ENST00000591475 MMP1P03956 469 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 PDE6AP16499 860 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 IFNAR1P17181 557 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 DDR1Q08345 913 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 KANK3Q6NY19 840 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 AIDAQ96BJ3 306 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 MYL10Q9BUA6 226 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 CNNM1Q9NRU3 951 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 FBXO2Q9UK22 296 aaPredicted RBP12.37□□□□□ -0.43
VPS4B-206ENST00000591475 NID2Q14112 1375 aa12.37□□□□□ -0.43
VPS4B-206ENST00000591475 POLR2DO15514 142 aaKnown RBP12.36□□□□□ -0.43
VPS4B-206ENST00000591475 UQCRFS1P1P0C7P4 283 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 PTPREP23469 700 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 SARSP49591 514 aaKnown RBP12.36□□□□□ -0.43
VPS4B-206ENST00000591475 FMR1Q06787 632 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS4B-206ENST00000591475 MORC3Q14149 939 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 HSP90AA4PQ58FG1 418 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 RILPL1Q5EBL4 403 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 SPECC1Q5M775 1068 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 TOGARAM2Q6ZUX3 1019 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 TRIM22Q8IYM9 498 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 ZNF579Q8NAF0 562 aaKnown RBP12.36□□□□□ -0.43
VPS4B-206ENST00000591475 UPF1Q92900 1129 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS4B-206ENST00000591475 WDR24Q96S15 920 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 STRBPQ96SI9 672 aaKnown RBP12.36□□□□□ -0.43
VPS4B-206ENST00000591475 FOXP1Q9H334 677 aaPredicted RBP12.36□□□□□ -0.43
VPS4B-206ENST00000591475 CNNM2Q9H8M5 875 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 SEC31BQ9NQW1 1179 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 RAI14Q9P0K7 980 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 SERTAD1Q9UHV2 236 aa12.36□□□□□ -0.43
VPS4B-206ENST00000591475 TCRBV5S4A2TA0A5A2 114 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 BTBD18B2RXH4 712 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 SEC31AO94979 1220 aaKnown RBP12.35□□□□□ -0.43
VPS4B-206ENST00000591475 IGHMBP2P38935 993 aaKnown RBP12.35□□□□□ -0.43
VPS4B-206ENST00000591475 TOB1P50616 345 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-206ENST00000591475 ADKP55263 362 aaKnown RBP12.35□□□□□ -0.43
VPS4B-206ENST00000591475 CC2D1AQ6P1N0 951 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-206ENST00000591475 C3orf67Q6ZVT6 689 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 RSRC2Q7L4I2 434 aaKnown RBP12.35□□□□□ -0.43
VPS4B-206ENST00000591475 DIS3L2Q8IYB7 885 aaKnown RBP12.35□□□□□ -0.43
VPS4B-206ENST00000591475 CCDC24Q8N4L8 307 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 RABGGTAQ92696 567 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 KIFC2Q96AC6 838 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 KRT23Q9C075 422 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-206ENST00000591475 WWC3Q9ULE0 1092 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 CEP131Q9UPN4 1083 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 PATL2C9JE40 543 aaKnown RBP12.35□□□□□ -0.43
VPS4B-206ENST00000591475 MMP10P09238 476 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 PRR29P0C7W0 189 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 ARID4AP29374 1257 aaPredicted RBP12.35□□□□□ -0.43
VPS4B-206ENST00000591475 PLCD1P51178 756 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 VGLL2Q8N8G2 317 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 SLC16A10Q8TF71 515 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 GOLGA1Q92805 767 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 NAPBQ9H115 298 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 ZSWIM5Q9P217 1185 aa12.35□□□□□ -0.43
VPS4B-206ENST00000591475 QSER1Q2KHR3 1735 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 MROH5Q6ZUA9 1318 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 UBE2Q2LH0YL09 131 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 PDE8BO95263 885 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 TBC1D8O95759 1140 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 ERCC5P28715 1186 aaPredicted RBP12.34□□□□□ -0.43
VPS4B-206ENST00000591475 NR1I3Q14994 352 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 RTN1Q16799 776 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 JAKMIP3Q5VZ66 844 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 ANKRD18AQ8IVF6 992 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 TRMT44Q8IYL2 757 aaKnown RBP12.34□□□□□ -0.43
VPS4B-206ENST00000591475 IFNL3Q8IZI9 196 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 UBXN6Q9BZV1 441 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 ARFGAP3Q9NP61 516 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 KCNJ14Q9UNX9 436 aa12.34□□□□□ -0.43
VPS4B-206ENST00000591475 SRPRBQ9Y5M8 271 aaKnown RBP12.34□□□□□ -0.43
VPS4B-206ENST00000591475 A0A1B0GTH6 734 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 AKR1B15C9JRZ8 316 aaPredicted RBP12.33□□□□□ -0.43
VPS4B-206ENST00000591475 POLR3GO15318 223 aaPredicted RBP12.33□□□□□ -0.43
VPS4B-206ENST00000591475 DEXIO95424 95 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 CCDC175P0C221 793 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 GUCY1A2P33402 732 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 PHKA1P46020 1223 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 GRIN1Q05586 938 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 CTDSPL2Q05D32 466 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 SART3Q15020 963 aaKnown RBP12.33□□□□□ -0.43
VPS4B-206ENST00000591475 CRY2Q49AN0 593 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 CT47A1Q5JQC4 288 aaPredicted RBP12.33□□□□□ -0.43
VPS4B-206ENST00000591475 AKNAD1Q5T1N1 836 aa12.33□□□□□ -0.43
VPS4B-206ENST00000591475 MSL1Q68DK7 614 aa12.33□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms