RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 ERO1BQ86YB8 467 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 ZSCAN29Q8IWY8 852 aaPredicted RBP13.62□□□□□ -0.23
SMAD4-211ENST00000590499 MAGEB6Q8N7X4 407 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 EDC3Q96F86 508 aaKnown RBP13.62□□□□□ -0.23
SMAD4-211ENST00000590499 HAUS7Q99871 368 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 PTPN18Q99952 460 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 NOL10Q9BSC4 688 aaKnown RBP13.62□□□□□ -0.23
SMAD4-211ENST00000590499 PTPRFP10586 1907 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 MYH1P12882 1939 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 FLT1P17948 1338 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 HTTP42858 3142 aa13.62□□□□□ -0.23
SMAD4-211ENST00000590499 GOLIM4O00461 696 aa13.61□□□□□ -0.23
SMAD4-211ENST00000590499 PDE6AP16499 860 aa13.61□□□□□ -0.23
SMAD4-211ENST00000590499 DYNLL1P63167 89 aaKnown RBP13.61□□□□□ -0.23
SMAD4-211ENST00000590499 PPIL2Q13356 520 aa13.61□□□□□ -0.23
SMAD4-211ENST00000590499 NOM1Q5C9Z4 860 aaKnown RBP13.61□□□□□ -0.23
SMAD4-211ENST00000590499 BRI3BPQ8WY22 251 aa13.61□□□□□ -0.23
SMAD4-211ENST00000590499 DNAJC2Q99543 621 aaKnown RBP13.61□□□□□ -0.23
SMAD4-211ENST00000590499 BOLA2Q9H3K6 86 aa13.61□□□□□ -0.23
SMAD4-211ENST00000590499 ATAD5Q96QE3 1844 aa13.61□□□□□ -0.23
SMAD4-211ENST00000590499 TCRBV5S4A2TA0A5A2 114 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 IRF6O14896 467 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 ALDH1A1P00352 501 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 GTF2A2P52657 109 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 PPATQ06203 517 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 HDAC1Q13547 482 aaPredicted RBP13.6□□□□□ -0.23
SMAD4-211ENST00000590499 AAMPQ13685 434 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 MIGA1Q8NAN2 632 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 TGFBRAP1Q8WUH2 860 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 RIOK1Q9BRS2 568 aaKnown RBP13.6□□□□□ -0.23
SMAD4-211ENST00000590499 BCL11AQ9H165 835 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 R3HDMLQ9H3Y0 253 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 ECHDC1Q9NTX5 307 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 PAG1Q9NWQ8 432 aa13.6□□□□□ -0.23
SMAD4-211ENST00000590499 NAV1Q8NEY1 1877 aa13.59□□□□□ -0.23
SMAD4-211ENST00000590499 TBC1D8O95759 1140 aa13.59□□□□□ -0.23
SMAD4-211ENST00000590499 SLC9C2Q5TAH2 1124 aa13.59□□□□□ -0.23
SMAD4-211ENST00000590499 METTL16Q86W50 562 aaKnown RBP13.59□□□□□ -0.23
SMAD4-211ENST00000590499 CERS3Q8IU89 383 aa13.59□□□□□ -0.23
SMAD4-211ENST00000590499 MAPKAPK5Q8IW41 473 aa13.59□□□□□ -0.23
SMAD4-211ENST00000590499 SCYL3Q8IZE3 742 aa13.59□□□□□ -0.23
SMAD4-211ENST00000590499 KCNH4Q9UQ05 1017 aa13.59□□□□□ -0.23
SMAD4-211ENST00000590499 CCL15-CCL14A0A0B4J2E2 113 aa13.58□□□□□ -0.24
SMAD4-211ENST00000590499 FAM196BA6NMK8 535 aa13.58□□□□□ -0.24
SMAD4-211ENST00000590499 RNF40O75150 1001 aa13.58□□□□□ -0.24
SMAD4-211ENST00000590499 GGCXP38435 758 aa13.58□□□□□ -0.24
SMAD4-211ENST00000590499 CCL15Q16663 113 aa13.58□□□□□ -0.24
SMAD4-211ENST00000590499 TRIM67Q6ZTA4 783 aa13.58□□□□□ -0.24
SMAD4-211ENST00000590499 DHX36Q9H2U1 1008 aaKnown RBP13.58□□□□□ -0.24
SMAD4-211ENST00000590499 DNAJC18Q9H819 358 aa13.58□□□□□ -0.24
SMAD4-211ENST00000590499 ZNF532Q9HCE3 1301 aa13.58□□□□□ -0.24
SMAD4-211ENST00000590499 GPR25O00155 361 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 CTNND1O60716 968 aaKnown RBP13.57□□□□□ -0.24
SMAD4-211ENST00000590499 CETPP11597 493 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 PTPRAP18433 802 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 ADD2P35612 726 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 SNAPC2Q13487 334 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 MOGSQ13724 837 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 RRP1BQ14684 758 aaKnown RBP13.57□□□□□ -0.24
SMAD4-211ENST00000590499 TSHZ3Q63HK5 1081 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 FAM43AQ8N2R8 423 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 OTUD7AQ8TE49 926 aaPredicted RBP13.57□□□□□ -0.24
SMAD4-211ENST00000590499 ZNF296Q8WUU4 475 aaPredicted RBP13.57□□□□□ -0.24
SMAD4-211ENST00000590499 TMUB1Q9BVT8 246 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 PI4KBQ9UBF8 816 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 HERC5Q9UII4 1024 aaKnown RBP13.57□□□□□ -0.24
SMAD4-211ENST00000590499 SALL3Q9BXA9 1300 aa13.57□□□□□ -0.24
SMAD4-211ENST00000590499 CENPFP49454 3210 aa13.56□□□□□ -0.24
SMAD4-211ENST00000590499 MAGEB6P1A0A0J9YX57 407 aa13.56□□□□□ -0.24
SMAD4-211ENST00000590499 CHGBP05060 677 aa13.56□□□□□ -0.24
SMAD4-211ENST00000590499 CRHR2Q13324 411 aa13.56□□□□□ -0.24
SMAD4-211ENST00000590499 SLFNL1Q499Z3 407 aa13.56□□□□□ -0.24
SMAD4-211ENST00000590499 OTUD7BQ6GQQ9 843 aa13.56□□□□□ -0.24
SMAD4-211ENST00000590499 EXOC6Q8TAG9 804 aa13.56□□□□□ -0.24
SMAD4-211ENST00000590499 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.56□□□□□ -0.24
SMAD4-211ENST00000590499 ZCCHC17Q9NP64 241 aaKnown RBP13.56□□□□□ -0.24
SMAD4-211ENST00000590499 PALD1Q9ULE6 856 aa13.56□□□□□ -0.24
SMAD4-211ENST00000590499 SUPT16HQ9Y5B9 1047 aaKnown RBP13.56□□□□□ -0.24
SMAD4-211ENST00000590499 TTC41PQ6P2S7 1318 aa13.56□□□□□ -0.24
SMAD4-211ENST00000590499 BAZ2AQ9UIF9 1905 aaKnown RBP13.55□□□□□ -0.24
SMAD4-211ENST00000590499 BTBD19C9JJ37 291 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 COPS2P61201 443 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 UBE3CQ15386 1083 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 SWT1Q5T5J6 900 aaKnown RBP13.55□□□□□ -0.24
SMAD4-211ENST00000590499 SMYD5Q6GMV2 418 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 LCORLQ8N3X6 602 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 PI4K2BQ8TCG2 481 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 GCC1Q96CN9 775 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 GPATCH3Q96I76 525 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 PICK1Q9NRD5 415 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.55□□□□□ -0.24
SMAD4-211ENST00000590499 SAP30BPQ9UHR5 308 aaKnown RBP13.55□□□□□ -0.24
SMAD4-211ENST00000590499 AFG3L2Q9Y4W6 797 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 LOC285556D6RIA3 1793 aa13.55□□□□□ -0.24
SMAD4-211ENST00000590499 CXCL11O14625 94 aa13.54□□□□□ -0.24
SMAD4-211ENST00000590499 CAP2P40123 477 aa13.54□□□□□ -0.24
SMAD4-211ENST00000590499 USP5P45974 858 aa13.54□□□□□ -0.24
SMAD4-211ENST00000590499 FOXP4Q8IVH2 680 aaPredicted RBP13.54□□□□□ -0.24
SMAD4-211ENST00000590499 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.54□□□□□ -0.24
SMAD4-211ENST00000590499 MCOLN1Q9GZU1 580 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms