RNA–Protein interactions for RNA: ENST00000588323.1

VPS4B-203, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 3

Gene VPS4B, Length 463 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-203ENST00000588323 CREG2Q8IUH2 290 aa6.16□□□□□ -1.42
VPS4B-203ENST00000588323 MCATQ8IVS2 390 aaKnown RBP6.16□□□□□ -1.42
VPS4B-203ENST00000588323 JARID2Q92833 1246 aaPredicted RBP6.16□□□□□ -1.42
VPS4B-203ENST00000588323 EPB41L4BQ9H329 900 aa6.16□□□□□ -1.42
VPS4B-203ENST00000588323 TRIT1Q9H3H1 467 aaKnown RBP6.16□□□□□ -1.42
VPS4B-203ENST00000588323 ADAM30Q9UKF2 790 aa6.16□□□□□ -1.42
VPS4B-203ENST00000588323 RBAK-RBAKDNI3L0D1 243 aa6.15□□□□□ -1.42
VPS4B-203ENST00000588323 TMEM253P0C7T8 217 aa6.15□□□□□ -1.42
VPS4B-203ENST00000588323 TFE3P19532 575 aaPredicted RBP6.15□□□□□ -1.42
VPS4B-203ENST00000588323 TPP2P29144 1249 aaPredicted RBP6.15□□□□□ -1.42
VPS4B-203ENST00000588323 EAPPQ56P03 285 aaPredicted RBP6.15□□□□□ -1.42
VPS4B-203ENST00000588323 DNAJB8Q8NHS0 232 aa6.15□□□□□ -1.42
VPS4B-203ENST00000588323 MYLIPQ8WY64 445 aa6.15□□□□□ -1.42
VPS4B-203ENST00000588323 Q96M66 194 aa6.15□□□□□ -1.42
VPS4B-203ENST00000588323 DCP1AQ9NPI6 582 aaPredicted RBP6.15□□□□□ -1.42
VPS4B-203ENST00000588323 CEP131Q9UPN4 1083 aa6.15□□□□□ -1.42
VPS4B-203ENST00000588323 ERVFC1P60507 584 aa6.14□□□□□ -1.43
VPS4B-203ENST00000588323 MEI1Q5TIA1 1274 aa6.14□□□□□ -1.43
VPS4B-203ENST00000588323 C1QL4Q86Z23 238 aa6.14□□□□□ -1.43
VPS4B-203ENST00000588323 ACSF2Q96CM8 615 aaPredicted RBP6.14□□□□□ -1.43
VPS4B-203ENST00000588323 DUSP15Q9H1R2 295 aaPredicted RBP6.14□□□□□ -1.43
VPS4B-203ENST00000588323 RNF19AQ9NV58 838 aa6.14□□□□□ -1.43
VPS4B-203ENST00000588323 GPATCH2Q9NW75 528 aa6.14□□□□□ -1.43
VPS4B-203ENST00000588323 WASH4PA8MWX3 477 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 HPXP02790 462 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 KRT1P04264 644 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 ZSCAN22P10073 491 aaPredicted RBP6.13□□□□□ -1.43
VPS4B-203ENST00000588323 SIAH1Q8IUQ4 282 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 FAM13CQ8NE31 585 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 CYB5D2Q8WUJ1 264 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 KRTAP4-9Q9BYQ8 210 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 ADAMTS10Q9H324 1103 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 DUSP13Q9UII6 198 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 KCNH3Q9ULD8 1083 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 TLR6Q9Y2C9 796 aa6.13□□□□□ -1.43
VPS4B-203ENST00000588323 ANKRD33BA6NCL7 494 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 TCAF2A6NFQ2 919 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 NPIPB6E9PJ23 425 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 BPNT1O95861 308 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 PLCG1P19174 1290 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 EGR3Q06889 387 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 PSMD2Q13200 908 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 TAF1CQ15572 869 aaPredicted RBP6.12□□□□□ -1.43
VPS4B-203ENST00000588323 GAB4Q2WGN9 574 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 LCNL1Q6ZST4 164 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 NOC4LQ9BVI4 516 aaKnown RBP6.12□□□□□ -1.43
VPS4B-203ENST00000588323 GPR62Q9BZJ7 368 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 KCNK12Q9HB15 430 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 TIMELESSQ9UNS1 1208 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 CORINQ9Y5Q5 1042 aa6.12□□□□□ -1.43
VPS4B-203ENST00000588323 ST13P50502 369 aaKnown RBP6.11□□□□□ -1.43
VPS4B-203ENST00000588323 YARSP54577 528 aaKnown RBP6.11□□□□□ -1.43
VPS4B-203ENST00000588323 ATG14Q6ZNE5 492 aa6.11□□□□□ -1.43
VPS4B-203ENST00000588323 CCDC84Q86UT8 332 aaPredicted RBP6.11□□□□□ -1.43
VPS4B-203ENST00000588323 DTWD2Q8NBA8 298 aa6.11□□□□□ -1.43
VPS4B-203ENST00000588323 PDZD8Q8NEN9 1154 aa6.11□□□□□ -1.43
VPS4B-203ENST00000588323 PPP1R13LQ8WUF5 828 aa6.11□□□□□ -1.43
VPS4B-203ENST00000588323 SYTL4Q96C24 671 aaPredicted RBP6.11□□□□□ -1.43
VPS4B-203ENST00000588323 SLC26A8Q96RN1 970 aa6.11□□□□□ -1.43
VPS4B-203ENST00000588323 TRAIPQ9BWF2 469 aa6.11□□□□□ -1.43
VPS4B-203ENST00000588323 UPK3BL1B0FP48 263 aa6.1□□□□□ -1.43
VPS4B-203ENST00000588323 UPK3BL2E5RIL1 263 aa6.1□□□□□ -1.43
VPS4B-203ENST00000588323 LTKP29376 864 aa6.1□□□□□ -1.43
VPS4B-203ENST00000588323 TNNI2P48788 182 aa6.1□□□□□ -1.43
VPS4B-203ENST00000588323 TSPYL5Q86VY4 417 aaPredicted RBP6.1□□□□□ -1.43
VPS4B-203ENST00000588323 OXR1Q8N573 874 aa6.1□□□□□ -1.43
VPS4B-203ENST00000588323 PHC3Q8NDX5 983 aa6.1□□□□□ -1.43
VPS4B-203ENST00000588323 KCNN1Q92952 543 aa6.1□□□□□ -1.43
VPS4B-203ENST00000588323 PARP2Q9UGN5 583 aa6.1□□□□□ -1.43
VPS4B-203ENST00000588323 ETV2O00321 342 aaPredicted RBP6.09□□□□□ -1.43
VPS4B-203ENST00000588323 MED14OSP0DP75 135 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 SRFP11831 508 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 TRHRP34981 398 aaPredicted RBP6.09□□□□□ -1.43
VPS4B-203ENST00000588323 DAB2P98082 770 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 KCNA10Q16322 511 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 TMEM201Q5SNT2 666 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 CIAPIN1Q6FI81 312 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 LILRA2Q8N149 483 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 RNF141Q8WVD5 230 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 DHX38Q92620 1227 aaKnown RBP6.09□□□□□ -1.43
VPS4B-203ENST00000588323 RNF32Q9H0A6 362 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 CD320Q9NPF0 282 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 PCDHA11Q9Y5I1 949 aa6.09□□□□□ -1.43
VPS4B-203ENST00000588323 FITM1A5D6W6 292 aa6.08□□□□□ -1.44
VPS4B-203ENST00000588323 CILPO75339 1184 aa6.08□□□□□ -1.44
VPS4B-203ENST00000588323 ZGLP1P0C6A0 271 aa6.08□□□□□ -1.44
VPS4B-203ENST00000588323 GLDCP23378 1020 aa6.08□□□□□ -1.44
VPS4B-203ENST00000588323 XPCQ01831 940 aaPredicted RBP6.08□□□□□ -1.44
VPS4B-203ENST00000588323 CAMK2GQ13555 558 aaPredicted RBP6.08□□□□□ -1.44
VPS4B-203ENST00000588323 BNC2Q6ZN30 1099 aaPredicted RBP6.08□□□□□ -1.44
VPS4B-203ENST00000588323 C19orf44Q9H6X5 657 aa6.08□□□□□ -1.44
VPS4B-203ENST00000588323 USP31Q70CQ4 1352 aa6.07□□□□□ -1.44
VPS4B-203ENST00000588323 F6X3S4 739 aa6.07□□□□□ -1.44
VPS4B-203ENST00000588323 F13A1P00488 732 aa6.07□□□□□ -1.44
VPS4B-203ENST00000588323 LMNB2Q03252 620 aa6.07□□□□□ -1.44
VPS4B-203ENST00000588323 SND1Q7KZF4 910 aaKnown RBP eCLIP6.07□□□□□ -1.44
VPS4B-203ENST00000588323 AMIGO3Q86WK7 504 aa6.07□□□□□ -1.44
VPS4B-203ENST00000588323 IRF2BP1Q8IU81 584 aa6.07□□□□□ -1.44
VPS4B-203ENST00000588323 SLFN12Q8IYM2 578 aa6.07□□□□□ -1.44
VPS4B-203ENST00000588323 GATAD2BQ8WXI9 593 aa6.07□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms