RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 CABP5Q9NP86 173 aa17.35■□□□□ 0.37
VMP1-206ENST00000587945 MPHOSPH10O00566 681 aaKnown RBP17.34■□□□□ 0.37
VMP1-206ENST00000587945 MBD4O95243 580 aa17.34■□□□□ 0.37
VMP1-206ENST00000587945 ERVK-9P63128 1117 aa17.34■□□□□ 0.37
VMP1-206ENST00000587945 ERVK-24P63145 666 aa17.34■□□□□ 0.37
VMP1-206ENST00000587945 SEPT2Q15019 361 aa17.34■□□□□ 0.37
VMP1-206ENST00000587945 DYNLL2Q96FJ2 89 aa17.34■□□□□ 0.37
VMP1-206ENST00000587945 ATAD5Q96QE3 1844 aa17.34■□□□□ 0.37
VMP1-206ENST00000587945 KIAA1683Q9H0B3 1180 aa17.34■□□□□ 0.37
VMP1-206ENST00000587945 PAK6Q9NQU5 681 aaPredicted RBP17.34■□□□□ 0.37
VMP1-206ENST00000587945 USP17L15C9J2P7 530 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 USP17L13C9JLJ4 530 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 USP17L11C9JVI0 530 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 USP17L18D6R9N7 530 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 USP17L22D6RA61 530 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 USP17L17D6RBQ6 530 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 USP17L19D6RCP7 530 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 USP17L20D6RJB6 530 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 SMIM22K7EJ46 135 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 HMGCRP04035 888 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 VCAM1P19320 739 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 USP14P54578 494 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 USP17L24Q0WX57 530 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.33■□□□□ 0.36
VMP1-206ENST00000587945 COLQQ9Y215 455 aaPredicted RBP17.33■□□□□ 0.36
VMP1-206ENST00000587945 CDK5RAP2Q96SN8 1893 aa17.33■□□□□ 0.36
VMP1-206ENST00000587945 CYP2D7A0A087X1C5 515 aa17.32■□□□□ 0.36
VMP1-206ENST00000587945 CNMDO75829 334 aa17.32■□□□□ 0.36
VMP1-206ENST00000587945 CATSPERGQ6ZRH7 1159 aa17.32■□□□□ 0.36
VMP1-206ENST00000587945 CCAR1Q8IX12 1150 aaKnown RBP17.32■□□□□ 0.36
VMP1-206ENST00000587945 TRIB2Q92519 343 aa17.32■□□□□ 0.36
VMP1-206ENST00000587945 NUDT12Q9BQG2 462 aa17.32■□□□□ 0.36
VMP1-206ENST00000587945 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.32■□□□□ 0.36
VMP1-206ENST00000587945 FOCADQ5VW36 1801 aa17.32■□□□□ 0.36
VMP1-206ENST00000587945 MGAMO43451 1857 aa17.31■□□□□ 0.36
VMP1-206ENST00000587945 A0A1W2PRG0 241 aa17.31■□□□□ 0.36
VMP1-206ENST00000587945 MAPK4P31152 587 aa17.31■□□□□ 0.36
VMP1-206ENST00000587945 GPR142Q7Z601 462 aa17.31■□□□□ 0.36
VMP1-206ENST00000587945 GTF3C2Q8WUA4 911 aaPredicted RBP17.31■□□□□ 0.36
VMP1-206ENST00000587945 HTATIP2Q9BUP3 242 aa17.31■□□□□ 0.36
VMP1-206ENST00000587945 CRISPLD2Q9H0B8 497 aa17.31■□□□□ 0.36
VMP1-206ENST00000587945 RPAP3Q9H6T3 665 aaPredicted RBP17.31■□□□□ 0.36
VMP1-206ENST00000587945 TSHZ3Q63HK5 1081 aa17.3■□□□□ 0.36
VMP1-206ENST00000587945 PLEKHH3Q7Z736 793 aa17.3■□□□□ 0.36
VMP1-206ENST00000587945 CLEC10AQ8IUN9 316 aa17.3■□□□□ 0.36
VMP1-206ENST00000587945 SOCS4Q8WXH5 440 aa17.3■□□□□ 0.36
VMP1-206ENST00000587945 USP6NLQ92738 828 aa17.3■□□□□ 0.36
VMP1-206ENST00000587945 HMX1Q9NP08 348 aaPredicted RBP17.3■□□□□ 0.36
VMP1-206ENST00000587945 ATP8A2Q9NTI2 1148 aa17.3■□□□□ 0.36
VMP1-206ENST00000587945 RABGAP1Q9Y3P9 1069 aa17.3■□□□□ 0.36
VMP1-206ENST00000587945 RPTORQ8N122 1335 aa17.29■□□□□ 0.36
VMP1-206ENST00000587945 USP17L12C9JPN9 530 aa17.29■□□□□ 0.36
VMP1-206ENST00000587945 USP17L21D6R901 530 aa17.29■□□□□ 0.36
VMP1-206ENST00000587945 AKR1B1P15121 316 aa17.29■□□□□ 0.36
VMP1-206ENST00000587945 UBE3CQ15386 1083 aa17.29■□□□□ 0.36
VMP1-206ENST00000587945 CCL14Q16627 93 aa17.29■□□□□ 0.36
VMP1-206ENST00000587945 KIAA1755Q5JYT7 1200 aa17.29■□□□□ 0.36
VMP1-206ENST00000587945 MORN1Q5T089 497 aa17.29■□□□□ 0.36
VMP1-206ENST00000587945 DIS3LQ8TF46 1054 aaKnown RBP17.29■□□□□ 0.36
VMP1-206ENST00000587945 PAWRQ96IZ0 340 aaKnown RBP17.29■□□□□ 0.36
VMP1-206ENST00000587945 PUS7LQ9H0K6 701 aaKnown RBP17.29■□□□□ 0.36
VMP1-206ENST00000587945 CWC22Q9HCG8 908 aaKnown RBP17.29■□□□□ 0.36
VMP1-206ENST00000587945 ECHDC1Q9NTX5 307 aa17.29■□□□□ 0.36
VMP1-206ENST00000587945 BTBD7Q9P203 1132 aa17.29■□□□□ 0.36
VMP1-206ENST00000587945 MYH1P12882 1939 aa17.28■□□□□ 0.36
VMP1-206ENST00000587945 XRCC5P13010 732 aaKnown RBP17.28■□□□□ 0.36
VMP1-206ENST00000587945 PRKAR2AP13861 404 aaKnown RBP17.28■□□□□ 0.36
VMP1-206ENST00000587945 C12orf60Q5U649 245 aa17.28■□□□□ 0.36
VMP1-206ENST00000587945 WDR78Q5VTH9 848 aa17.28■□□□□ 0.36
VMP1-206ENST00000587945 CHRDL2Q6WN34 429 aa17.28■□□□□ 0.36
VMP1-206ENST00000587945 TMEM179Q6ZVK1 233 aa17.28■□□□□ 0.36
VMP1-206ENST00000587945 DCTPP1Q9H773 170 aa17.28■□□□□ 0.36
VMP1-206ENST00000587945 SWAP70Q9UH65 585 aa17.28■□□□□ 0.36
VMP1-206ENST00000587945 SLC4A4Q9Y6R1 1079 aa17.28■□□□□ 0.36
VMP1-206ENST00000587945 DOCK3Q8IZD9 2030 aa17.27■□□□□ 0.36
VMP1-206ENST00000587945 SPDYE16A6NNV3 312 aaPredicted RBP17.27■□□□□ 0.36
VMP1-206ENST00000587945 ZKSCAN1P17029 563 aaPredicted RBP17.27■□□□□ 0.36
VMP1-206ENST00000587945 RGS2P41220 211 aa17.27■□□□□ 0.36
VMP1-206ENST00000587945 CDK8P49336 464 aa17.27■□□□□ 0.36
VMP1-206ENST00000587945 MAP3K21Q5TCX8 1036 aa17.27■□□□□ 0.36
VMP1-206ENST00000587945 SIAH1Q8IUQ4 282 aa17.27■□□□□ 0.36
VMP1-206ENST00000587945 DDX60LQ5H9U9 1706 aaKnown RBP17.27■□□□□ 0.35
VMP1-206ENST00000587945 FXR1P51114 621 aaKnown RBP eCLIP17.26■□□□□ 0.35
VMP1-206ENST00000587945 CCNA1P78396 465 aa17.26■□□□□ 0.35
VMP1-206ENST00000587945 CACNB2Q08289 660 aaPredicted RBP17.26■□□□□ 0.35
VMP1-206ENST00000587945 ZSCAN25Q6NSZ9 544 aa17.26■□□□□ 0.35
VMP1-206ENST00000587945 LBX2Q6XYB7 198 aa17.26■□□□□ 0.35
VMP1-206ENST00000587945 TANGO6Q9C0B7 1094 aa17.26■□□□□ 0.35
VMP1-206ENST00000587945 PCDHB15Q9Y5E8 787 aa17.26■□□□□ 0.35
VMP1-206ENST00000587945 CAPN2P17655 700 aa17.25■□□□□ 0.35
VMP1-206ENST00000587945 MNX1P50219 401 aaPredicted RBP17.25■□□□□ 0.35
VMP1-206ENST00000587945 ICA1Q05084 483 aa17.25■□□□□ 0.35
VMP1-206ENST00000587945 MAP2K5Q13163 448 aa17.25■□□□□ 0.35
VMP1-206ENST00000587945 COG2Q14746 738 aa17.25■□□□□ 0.35
VMP1-206ENST00000587945 CTR9Q6PD62 1173 aa17.25■□□□□ 0.35
VMP1-206ENST00000587945 C16orf86Q6ZW13 317 aa17.25■□□□□ 0.35
VMP1-206ENST00000587945 NECAB2Q7Z6G3 386 aa17.25■□□□□ 0.35
VMP1-206ENST00000587945 SPICE1Q8N0Z3 855 aa17.25■□□□□ 0.35
VMP1-206ENST00000587945 DDRGK1Q96HY6 314 aa17.25■□□□□ 0.35
VMP1-206ENST00000587945 APBA2Q99767 749 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms