RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 ANKRD13CQ8N6S4 541 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 HELLSQ9NRZ9 838 aa12.99□□□□□ -0.33
CLIP3-203ENST00000586457 MYH7P12883 1935 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 NAV1Q8NEY1 1877 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 USP17L15C9J2P7 530 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 USP17L13C9JLJ4 530 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 USP17L11C9JVI0 530 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 USP17L18D6R9N7 530 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 USP17L22D6RA61 530 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 USP17L17D6RBQ6 530 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 USP17L19D6RCP7 530 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 USP17L20D6RJB6 530 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 HIP1O00291 1037 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 JAG1P78504 1218 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 GABPAQ06546 454 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 USP17L24Q0WX57 530 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 SLC9C1Q4G0N8 1177 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 MCMDC2Q4G0Z9 681 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 SBK1Q52WX2 424 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 C16orf86Q6ZW13 317 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 SLC44A5Q8NCS7 719 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 RAET1EQ8TD07 263 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 COA7Q96BR5 231 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 SEC62Q99442 399 aaKnown RBP12.98□□□□□ -0.33
CLIP3-203ENST00000586457 ASCC2Q9H1I8 757 aaPredicted RBP12.98□□□□□ -0.33
CLIP3-203ENST00000586457 DIAPH3Q9NSV4 1193 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 BIN2Q9UBW5 565 aaPredicted RBP12.98□□□□□ -0.33
CLIP3-203ENST00000586457 LAMB1P07942 1786 aa12.98□□□□□ -0.33
CLIP3-203ENST00000586457 SALL3Q9BXA9 1300 aa12.97□□□□□ -0.33
CLIP3-203ENST00000586457 TNPO2O14787 897 aaKnown RBP12.97□□□□□ -0.33
CLIP3-203ENST00000586457 NEFLP07196 543 aa12.97□□□□□ -0.33
CLIP3-203ENST00000586457 SHROOM1Q2M3G4 852 aaPredicted RBP12.97□□□□□ -0.33
CLIP3-203ENST00000586457 PLEKHM2Q8IWE5 1019 aa12.97□□□□□ -0.33
CLIP3-203ENST00000586457 GTF3C2Q8WUA4 911 aaPredicted RBP12.97□□□□□ -0.33
CLIP3-203ENST00000586457 KIAA1683Q9H0B3 1180 aa12.97□□□□□ -0.33
CLIP3-203ENST00000586457 KANSL2Q9H9L4 492 aa12.97□□□□□ -0.33
CLIP3-203ENST00000586457 ATAD5Q96QE3 1844 aa12.97□□□□□ -0.33
CLIP3-203ENST00000586457 AKR1B1P15121 316 aa12.96□□□□□ -0.33
CLIP3-203ENST00000586457 HOXA7P31268 230 aaPredicted RBP12.96□□□□□ -0.33
CLIP3-203ENST00000586457 ICA1Q05084 483 aa12.96□□□□□ -0.33
CLIP3-203ENST00000586457 GPRC5AQ8NFJ5 357 aa12.96□□□□□ -0.33
CLIP3-203ENST00000586457 P2RX7Q99572 595 aaKnown RBP12.96□□□□□ -0.33
CLIP3-203ENST00000586457 TMEM106CQ9BVX2 250 aa12.96□□□□□ -0.33
CLIP3-203ENST00000586457 TANGO6Q9C0B7 1094 aa12.96□□□□□ -0.33
CLIP3-203ENST00000586457 OSBPL3Q9H4L5 887 aa12.96□□□□□ -0.33
CLIP3-203ENST00000586457 GOPCQ9HD26 462 aa12.96□□□□□ -0.33
CLIP3-203ENST00000586457 EMILIN3Q9NT22 766 aa12.96□□□□□ -0.33
CLIP3-203ENST00000586457 TSPY3P0CV98 308 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 TSPY8P0CW00 308 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 BCRP11274 1271 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 FAM110CQ1W6H9 321 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 CCDC129Q6ZRS4 1044 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 ACER1Q8TDN7 264 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 TRIM47Q96LD4 638 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 PAGR1Q9BTK6 254 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 ARHGAP39Q9C0H5 1083 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 RPAP3Q9H6T3 665 aaPredicted RBP12.95□□□□□ -0.34
CLIP3-203ENST00000586457 TOMM22Q9NS69 142 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 HOXC10Q9NYD6 342 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 SRRDQ9UH36 339 aa12.95□□□□□ -0.34
CLIP3-203ENST00000586457 MYPNQ86TC9 1320 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 SDSP20132 328 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 SOX10P56693 466 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 HERVK_113P62684 666 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 CCNA1P78396 465 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 EVX2Q03828 476 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 NMIQ13287 307 aaPredicted RBP12.94□□□□□ -0.34
CLIP3-203ENST00000586457 PPP4R3BQ5MIZ7 849 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 SAMD1Q6SPF0 538 aaPredicted RBP12.94□□□□□ -0.34
CLIP3-203ENST00000586457 CWC27Q6UX04 472 aaKnown RBP12.94□□□□□ -0.34
CLIP3-203ENST00000586457 LPAR1Q92633 364 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 C12orf42Q96LP6 360 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 PTCH2Q9Y6C5 1203 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 SIPA1L1O43166 1804 aa12.94□□□□□ -0.34
CLIP3-203ENST00000586457 PRDM1O75626 825 aa12.93□□□□□ -0.34
CLIP3-203ENST00000586457 MYCP01106 439 aaPredicted RBP12.93□□□□□ -0.34
CLIP3-203ENST00000586457 EEF2P13639 858 aaKnown RBP12.93□□□□□ -0.34
CLIP3-203ENST00000586457 VCAM1P19320 739 aa12.93□□□□□ -0.34
CLIP3-203ENST00000586457 PPARAQ07869 468 aa12.93□□□□□ -0.34
CLIP3-203ENST00000586457 COG2Q14746 738 aa12.93□□□□□ -0.34
CLIP3-203ENST00000586457 WDR78Q5VTH9 848 aa12.93□□□□□ -0.34
CLIP3-203ENST00000586457 CATSPERGQ6ZRH7 1159 aa12.93□□□□□ -0.34
CLIP3-203ENST00000586457 FAM227BQ96M60 508 aa12.93□□□□□ -0.34
CLIP3-203ENST00000586457 ISY1Q9ULR0 285 aaKnown RBP12.93□□□□□ -0.34
CLIP3-203ENST00000586457 CTDP1Q9Y5B0 961 aaPredicted RBP12.93□□□□□ -0.34
CLIP3-203ENST00000586457 BAZ2AQ9UIF9 1905 aaKnown RBP12.93□□□□□ -0.34
CLIP3-203ENST00000586457 PHIPQ8WWQ0 1821 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 ADGRA2Q96PE1 1338 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 TSPY2A6NKD2 308 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 MAPK4P31152 587 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 GUCY1A2P33402 732 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 UBXN2AP68543 259 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 TFAP4Q01664 338 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 MLLT1Q03111 559 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-203ENST00000586457 SPICE1Q8N0Z3 855 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 RUFY2Q8WXA3 655 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 EPB41L4AQ9HCS5 686 aaPredicted RBP12.92□□□□□ -0.34
CLIP3-203ENST00000586457 CLIP2Q9UDT6 1046 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 TMX2Q9Y320 296 aa12.92□□□□□ -0.34
CLIP3-203ENST00000586457 CCDC171Q6TFL3 1326 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms