RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ZSWIM5Q9P217 1185 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 RBM27Q9P2N5 1060 aaKnown RBP7.22□□□□□ -1.25
LIG3-206ENST00000586058 SERPINB13Q9UIV8 391 aa7.22□□□□□ -1.25
LIG3-206ENST00000586058 NID2Q14112 1375 aa7.21□□□□□ -1.25
LIG3-206ENST00000586058 PLIN4Q96Q06 1357 aa7.21□□□□□ -1.25
LIG3-206ENST00000586058 CYP2D7A0A087X1C5 515 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 PTPDC1A2A3K4 754 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 H7C1D1 291 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 NFKBIEO00221 500 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 MPHOSPH10O00566 681 aaKnown RBP7.21□□□□□ -1.26
LIG3-206ENST00000586058 ENTPD3O75355 529 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 PRDM1O75626 825 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 PDIA3P30101 505 aaKnown RBP7.21□□□□□ -1.26
LIG3-206ENST00000586058 ANTXR2P58335 489 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 RHBDL3P58872 404 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 SCRN1Q12765 414 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 NBR1Q14596 966 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 CDC42EP5Q6NZY7 148 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 CYB5R4Q7L1T6 521 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 ZNF654Q8IZM8 581 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 NLGN2Q8NFZ4 835 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 MXD3Q9BW11 206 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 IDI2Q9BXS1 227 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 LY9Q9HBG7 655 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 VEZTQ9HBM0 779 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 STX8Q9UNK0 236 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 DDX52Q9Y2R4 599 aaKnown RBP eCLIP7.21□□□□□ -1.26
LIG3-206ENST00000586058 GJA3Q9Y6H8 435 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 STK36Q9NRP7 1315 aa7.21□□□□□ -1.26
LIG3-206ENST00000586058 POLR2AP24928 1970 aaKnown RBP7.2□□□□□ -1.26
LIG3-206ENST00000586058 WDHD1O75717 1129 aaPredicted RBP7.2□□□□□ -1.26
LIG3-206ENST00000586058 FGRP09769 529 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 ZSCAN22P10073 491 aaPredicted RBP7.2□□□□□ -1.26
LIG3-206ENST00000586058 CYP2D6P10635 497 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 CDK8P49336 464 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 GNAQP50148 359 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 EVCP57679 992 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 TFAP4Q01664 338 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 CXCL9Q07325 125 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 SSRP1Q08945 709 aaKnown RBP7.2□□□□□ -1.26
LIG3-206ENST00000586058 TCP10Q12799 353 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 SAFBQ15424 915 aaKnown RBP eCLIP7.2□□□□□ -1.26
LIG3-206ENST00000586058 DGKHQ86XP1 1220 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 CCDC17Q96LX7 622 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 CSRNP1Q96S65 589 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 TDRD3Q9H7E2 651 aaKnown RBP7.2□□□□□ -1.26
LIG3-206ENST00000586058 BRMS1Q9HCU9 246 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 CABP5Q9NP86 173 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 MYOZ2Q9NPC6 264 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 PI4KBQ9UBF8 816 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 MKRN1Q9UHC7 482 aaKnown RBP7.2□□□□□ -1.26
LIG3-206ENST00000586058 HERC5Q9UII4 1024 aaKnown RBP7.2□□□□□ -1.26
LIG3-206ENST00000586058 ISY1Q9ULR0 285 aaKnown RBP7.2□□□□□ -1.26
LIG3-206ENST00000586058 OTOFQ9HC10 1997 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 ATRNL1Q5VV63 1379 aa7.2□□□□□ -1.26
LIG3-206ENST00000586058 WDR90Q96KV7 1748 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 F13A1P00488 732 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 SYT1P21579 422 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 DDIT3P35638 169 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 NFKBIBQ15653 356 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 KIF4BQ2VIQ3 1234 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 SKOR2Q2VWA4 1001 aaPredicted RBP7.19□□□□□ -1.26
LIG3-206ENST00000586058 FAM47AQ5JRC9 791 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 FKBP1CQ5VVH2 108 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 APOBEC3HQ6NTF7 200 aaKnown RBP7.19□□□□□ -1.26
LIG3-206ENST00000586058 APOBEC3FQ8IUX4 373 aaKnown RBP7.19□□□□□ -1.26
LIG3-206ENST00000586058 CCDC144CPQ8IYA2 1237 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 GPC2Q8N158 579 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 ENAHQ8N8S7 591 aaPredicted RBP7.19□□□□□ -1.26
LIG3-206ENST00000586058 MTMR14Q8NCE2 650 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 RGS22Q8NE09 1264 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 NSUN7Q8NE18 718 aaKnown RBP7.19□□□□□ -1.26
LIG3-206ENST00000586058 IGDCC4Q8TDY8 1250 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 DPF2Q92785 391 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 TNPO1Q92973 898 aaKnown RBP7.19□□□□□ -1.26
LIG3-206ENST00000586058 DDX11Q96FC9 970 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 C8orf76Q96K31 380 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 ZSCAN16Q9H4T2 348 aaPredicted RBP7.19□□□□□ -1.26
LIG3-206ENST00000586058 SH2D4AQ9H788 454 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 KCNQ5Q9NR82 932 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 TCP11L1Q9NUJ3 509 aa7.19□□□□□ -1.26
LIG3-206ENST00000586058 ORC3Q9UBD5 711 aaPredicted RBP7.19□□□□□ -1.26
LIG3-206ENST00000586058 ZC3H4Q9UPT8 1303 aaKnown RBP7.19□□□□□ -1.26
LIG3-206ENST00000586058 PARP14Q460N5 1801 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 CLRN2A0PK11 232 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 TCP10L2B9ZVM9 353 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 FZD9O00144 591 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 DEXIO95424 95 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 BRD1O95696 1058 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 TOP1P11387 765 aaKnown RBP7.18□□□□□ -1.26
LIG3-206ENST00000586058 RASA1P20936 1047 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 PLCD1P51178 756 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 KRT85P78386 507 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 GPR162Q16538 588 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 CERKLQ49MI3 558 aaPredicted RBP7.18□□□□□ -1.26
LIG3-206ENST00000586058 RBM26Q5T8P6 1007 aaKnown RBP7.18□□□□□ -1.26
LIG3-206ENST00000586058 FOXD4L5Q5VV16 416 aaPredicted RBP7.18□□□□□ -1.26
LIG3-206ENST00000586058 DCAF15Q66K64 600 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 MCTP1Q6DN14 999 aa7.18□□□□□ -1.26
LIG3-206ENST00000586058 TMEM179Q6ZVK1 233 aa7.18□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms