RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 MTMR3Q13615 1198 aa6.62□□□□□ -1.35
SMCHD1-209ENST00000583441 ZNF507Q8TCN5 953 aa6.62□□□□□ -1.35
SMCHD1-209ENST00000583441 PPP1R13LQ8WUF5 828 aa6.62□□□□□ -1.35
SMCHD1-209ENST00000583441 EMILIN2Q9BXX0 1053 aa6.62□□□□□ -1.35
SMCHD1-209ENST00000583441 MBD1Q9UIS9 605 aaPredicted RBP6.62□□□□□ -1.35
SMCHD1-209ENST00000583441 OR14I1A6ND48 311 aa6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 PRICKLE3O43900 615 aaPredicted RBP6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 ZGLP1P0C6A0 271 aa6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 TNK2Q07912 1038 aa6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 SNX17Q15036 470 aa6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 NR0B2Q15466 257 aa6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 STK35Q8TDR2 534 aa6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 DHX38Q92620 1227 aaKnown RBP6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 CCDC87Q9NVE4 849 aa6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 GPR160Q9UJ42 338 aa6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 CCDC9Q9Y3X0 531 aaKnown RBP6.61□□□□□ -1.35
SMCHD1-209ENST00000583441 GADD45BO75293 160 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 NPR3P17342 541 aa6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 CYP7A1P22680 504 aa6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 MAGEA10P43363 369 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 KIR3DL1P43629 444 aa6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 RING1Q06587 406 aa6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 CNKSR3Q6P9H4 555 aa6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 SPPL2CQ8IUH8 684 aa6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 SYTL4Q96C24 671 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 CBX8Q9HC52 389 aa6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 EPB41L4AQ9HCS5 686 aaPredicted RBP6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 TRAK1Q9UPV9 953 aa6.6□□□□□ -1.35
SMCHD1-209ENST00000583441 CARNS1A5YM72 827 aa6.59□□□□□ -1.35
SMCHD1-209ENST00000583441 N4BP3O15049 544 aa6.59□□□□□ -1.35
SMCHD1-209ENST00000583441 EPHB3P54753 998 aa6.59□□□□□ -1.35
SMCHD1-209ENST00000583441 DTHD1Q6ZMT9 781 aa6.59□□□□□ -1.35
SMCHD1-209ENST00000583441 LINC01356Q8N9X3 169 aa6.59□□□□□ -1.35
SMCHD1-209ENST00000583441 MFSD2AQ8NA29 543 aa6.59□□□□□ -1.35
SMCHD1-209ENST00000583441 COX4I2Q96KJ9 171 aa6.59□□□□□ -1.35
SMCHD1-209ENST00000583441 MRIQ9BWK5 157 aa6.59□□□□□ -1.35
SMCHD1-209ENST00000583441 WDR26Q9H7D7 661 aa6.59□□□□□ -1.35
SMCHD1-209ENST00000583441 TPP2P29144 1249 aaPredicted RBP6.58□□□□□ -1.36
SMCHD1-209ENST00000583441 UBXN11Q5T124 520 aa6.58□□□□□ -1.36
SMCHD1-209ENST00000583441 RIN3Q8TB24 985 aa6.58□□□□□ -1.36
SMCHD1-209ENST00000583441 SLITRK6Q9H5Y7 841 aa6.58□□□□□ -1.36
SMCHD1-209ENST00000583441 GNEQ9Y223 722 aaKnown RBP6.58□□□□□ -1.36
SMCHD1-209ENST00000583441 WASH4PA8MWX3 477 aa6.57□□□□□ -1.36
SMCHD1-209ENST00000583441 NME2P22392 152 aa6.57□□□□□ -1.36
SMCHD1-209ENST00000583441 LETMD1Q6P1Q0 360 aa6.57□□□□□ -1.36
SMCHD1-209ENST00000583441 MTMR7Q9Y216 660 aa6.57□□□□□ -1.36
SMCHD1-209ENST00000583441 CPNE3O75131 537 aaKnown RBP6.56□□□□□ -1.36
SMCHD1-209ENST00000583441 SSFA2P28290 1259 aa6.56□□□□□ -1.36
SMCHD1-209ENST00000583441 ADAM17P78536 824 aa6.56□□□□□ -1.36
SMCHD1-209ENST00000583441 EGR3Q06889 387 aa6.56□□□□□ -1.36
SMCHD1-209ENST00000583441 ZFYVE27Q5T4F4 411 aa6.56□□□□□ -1.36
SMCHD1-209ENST00000583441 ADGRF1Q5T601 910 aa6.56□□□□□ -1.36
SMCHD1-209ENST00000583441 PIWIL2Q8TC59 973 aaKnown RBP6.56□□□□□ -1.36
SMCHD1-209ENST00000583441 DUSP13Q9UII6 198 aa6.56□□□□□ -1.36
SMCHD1-209ENST00000583441 GDF5P43026 501 aa6.55□□□□□ -1.36
SMCHD1-209ENST00000583441 KCNC1P48547 511 aa6.55□□□□□ -1.36
SMCHD1-209ENST00000583441 CHRNEQ04844 493 aa6.55□□□□□ -1.36
SMCHD1-209ENST00000583441 ZNF252P-AS1Q0IIN9 211 aa6.55□□□□□ -1.36
SMCHD1-209ENST00000583441 TMCO4Q5TGY1 634 aa6.55□□□□□ -1.36
SMCHD1-209ENST00000583441 MPRIPQ6WCQ1 1025 aa6.55□□□□□ -1.36
SMCHD1-209ENST00000583441 SCAND2PQ9GZW5 306 aaPredicted RBP6.55□□□□□ -1.36
SMCHD1-209ENST00000583441 TRIT1Q9H3H1 467 aaKnown RBP6.55□□□□□ -1.36
SMCHD1-209ENST00000583441 IVNS1ABPQ9Y6Y0 642 aa6.55□□□□□ -1.36
SMCHD1-209ENST00000583441 HRKO00198 91 aa6.54□□□□□ -1.36
SMCHD1-209ENST00000583441 IRS4O14654 1257 aaPredicted RBP6.54□□□□□ -1.36
SMCHD1-209ENST00000583441 GALK1P51570 392 aa6.54□□□□□ -1.36
SMCHD1-209ENST00000583441 FAM129CQ86XR2 697 aa6.54□□□□□ -1.36
SMCHD1-209ENST00000583441 TMEFF1Q8IYR6 380 aa6.54□□□□□ -1.36
SMCHD1-209ENST00000583441 ELMO3Q96BJ8 720 aa6.54□□□□□ -1.36
SMCHD1-209ENST00000583441 GZF1Q9H116 711 aaPredicted RBP6.54□□□□□ -1.36
SMCHD1-209ENST00000583441 CNTD2Q9H8S5 307 aa6.54□□□□□ -1.36
SMCHD1-209ENST00000583441 CACNA2D2Q9NY47 1150 aa6.54□□□□□ -1.36
SMCHD1-209ENST00000583441 FCGRTP55899 365 aa6.53□□□□□ -1.36
SMCHD1-209ENST00000583441 SLBPQ14493 270 aaKnown RBP eCLIP6.53□□□□□ -1.36
SMCHD1-209ENST00000583441 CRB2Q5IJ48 1285 aa6.53□□□□□ -1.36
SMCHD1-209ENST00000583441 PHLDB3Q6NSJ2 640 aa6.53□□□□□ -1.36
SMCHD1-209ENST00000583441 SIRT2Q8IXJ6 389 aa6.53□□□□□ -1.36
SMCHD1-209ENST00000583441 SHISA4Q96DD7 197 aa6.53□□□□□ -1.36
SMCHD1-209ENST00000583441 PWWP2AQ96N64 755 aa6.53□□□□□ -1.36
SMCHD1-209ENST00000583441 PPP4R2Q9NY27 417 aa6.53□□□□□ -1.36
SMCHD1-209ENST00000583441 GAB4Q2WGN9 574 aa6.52□□□□□ -1.37
SMCHD1-209ENST00000583441 TXNDC2Q86VQ3 553 aa6.52□□□□□ -1.37
SMCHD1-209ENST00000583441 FBRSQ9HAH7 460 aa6.52□□□□□ -1.37
SMCHD1-209ENST00000583441 SMPD4Q9NXE4 827 aa6.52□□□□□ -1.37
SMCHD1-209ENST00000583441 PCDHA4Q9UN74 947 aa6.52□□□□□ -1.37
SMCHD1-209ENST00000583441 LTKP29376 864 aa6.51□□□□□ -1.37
SMCHD1-209ENST00000583441 VIPR1P32241 457 aa6.51□□□□□ -1.37
SMCHD1-209ENST00000583441 GRM2Q14416 872 aa6.51□□□□□ -1.37
SMCHD1-209ENST00000583441 SND1Q7KZF4 910 aaKnown RBP eCLIP6.51□□□□□ -1.37
SMCHD1-209ENST00000583441 ANKS4BQ8N8V4 417 aa6.51□□□□□ -1.37
SMCHD1-209ENST00000583441 TP53I13Q8NBR0 393 aaPredicted RBP6.51□□□□□ -1.37
SMCHD1-209ENST00000583441 MZB1Q8WU39 189 aa6.51□□□□□ -1.37
SMCHD1-209ENST00000583441 CCDC74AQ96AQ1 378 aa6.51□□□□□ -1.37
SMCHD1-209ENST00000583441 DUSP15Q9H1R2 295 aaPredicted RBP6.51□□□□□ -1.37
SMCHD1-209ENST00000583441 GPATCH2Q9NW75 528 aa6.51□□□□□ -1.37
SMCHD1-209ENST00000583441 PRAMEF27A3QJZ7 478 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 RBAK-RBAKDNI3L0D1 243 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 TRIM37O94972 964 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 C6P13671 934 aa6.5□□□□□ -1.37
SMCHD1-209ENST00000583441 CAP2P40123 477 aa6.5□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms