RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 GABPAQ06546 454 aa24.75■■□□□ 1.55
SHMT1-209ENST00000582653 RAB3GAP1Q15042 981 aa24.75■■□□□ 1.55
SHMT1-209ENST00000582653 MCM9Q9NXL9 1143 aa24.75■■□□□ 1.55
SHMT1-209ENST00000582653 USP17L15C9J2P7 530 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 USP17L13C9JLJ4 530 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 USP17L11C9JVI0 530 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 USP17L18D6R9N7 530 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 USP17L22D6RA61 530 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 USP17L17D6RBQ6 530 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 USP17L19D6RCP7 530 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 USP17L20D6RJB6 530 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 PRKAB2O43741 272 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 MAPK4P31152 587 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 ERVK-9P63128 1117 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 ERVK-24P63145 666 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 USP17L24Q0WX57 530 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 POTEEQ6S8J3 1075 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 NUDT12Q9BQG2 462 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 KIAA1683Q9H0B3 1180 aa24.74■■□□□ 1.55
SHMT1-209ENST00000582653 RPTORQ8N122 1335 aa24.73■■□□□ 1.55
SHMT1-209ENST00000582653 XRCC5P13010 732 aaKnown RBP24.73■■□□□ 1.55
SHMT1-209ENST00000582653 ZYXQ15942 572 aaKnown RBP24.73■■□□□ 1.55
SHMT1-209ENST00000582653 XRN2Q9H0D6 950 aaKnown RBP eCLIP24.73■■□□□ 1.55
SHMT1-209ENST00000582653 DCTPP1Q9H773 170 aa24.73■■□□□ 1.55
SHMT1-209ENST00000582653 HMX1Q9NP08 348 aaPredicted RBP24.73■■□□□ 1.55
SHMT1-209ENST00000582653 DCP1AQ9NPI6 582 aaPredicted RBP24.73■■□□□ 1.55
SHMT1-209ENST00000582653 MBD4O95243 580 aa24.72■■□□□ 1.55
SHMT1-209ENST00000582653 CYP2D6P10635 497 aa24.72■■□□□ 1.55
SHMT1-209ENST00000582653 CYP2B6P20813 491 aa24.72■■□□□ 1.55
SHMT1-209ENST00000582653 CATSPERGQ6ZRH7 1159 aa24.72■■□□□ 1.55
SHMT1-209ENST00000582653 ACER1Q8TDN7 264 aa24.72■■□□□ 1.55
SHMT1-209ENST00000582653 FEZ1Q99689 392 aa24.72■■□□□ 1.55
SHMT1-209ENST00000582653 NR2E3Q9Y5X4 410 aa24.72■■□□□ 1.55
SHMT1-209ENST00000582653 DDX60LQ5H9U9 1706 aaKnown RBP24.72■■□□□ 1.55
SHMT1-209ENST00000582653 GUCY1A2P33402 732 aa24.71■■□□□ 1.55
SHMT1-209ENST00000582653 CCAR1Q8IX12 1150 aaKnown RBP24.71■■□□□ 1.55
SHMT1-209ENST00000582653 SOCS4Q8WXH5 440 aa24.71■■□□□ 1.55
SHMT1-209ENST00000582653 DDX24Q9GZR7 859 aaKnown RBP eCLIP24.71■■□□□ 1.55
SHMT1-209ENST00000582653 RABGAP1Q9Y3P9 1069 aa24.71■■□□□ 1.55
SHMT1-209ENST00000582653 TRIM32Q13049 653 aa24.7■■□□□ 1.54
SHMT1-209ENST00000582653 TRMT44Q8IYL2 757 aaKnown RBP24.7■■□□□ 1.54
SHMT1-209ENST00000582653 TRIB2Q92519 343 aa24.7■■□□□ 1.54
SHMT1-209ENST00000582653 USP6NLQ92738 828 aa24.7■■□□□ 1.54
SHMT1-209ENST00000582653 PAGR1Q9BTK6 254 aa24.7■■□□□ 1.54
SHMT1-209ENST00000582653 PORCNQ9H237 461 aa24.7■■□□□ 1.54
SHMT1-209ENST00000582653 ECHDC1Q9NTX5 307 aa24.7■■□□□ 1.54
SHMT1-209ENST00000582653 PCDHB15Q9Y5E8 787 aa24.7■■□□□ 1.54
SHMT1-209ENST00000582653 NAV1Q8NEY1 1877 aa24.7■■□□□ 1.54
SHMT1-209ENST00000582653 FXR1P51114 621 aaKnown RBP eCLIP24.69■■□□□ 1.54
SHMT1-209ENST00000582653 TSHZ3Q63HK5 1081 aa24.69■■□□□ 1.54
SHMT1-209ENST00000582653 LBX2Q6XYB7 198 aa24.69■■□□□ 1.54
SHMT1-209ENST00000582653 GPR142Q7Z601 462 aa24.69■■□□□ 1.54
SHMT1-209ENST00000582653 ANKLE1Q8NAG6 615 aa24.69■■□□□ 1.54
SHMT1-209ENST00000582653 SLC44A5Q8NCS7 719 aa24.69■■□□□ 1.54
SHMT1-209ENST00000582653 PAWRQ96IZ0 340 aaKnown RBP24.69■■□□□ 1.54
SHMT1-209ENST00000582653 SMIM22K7EJ46 135 aa24.68■■□□□ 1.54
SHMT1-209ENST00000582653 VCAM1P19320 739 aa24.68■■□□□ 1.54
SHMT1-209ENST00000582653 SEPT2Q15019 361 aa24.68■■□□□ 1.54
SHMT1-209ENST00000582653 UBE3CQ15386 1083 aa24.68■■□□□ 1.54
SHMT1-209ENST00000582653 MORN1Q5T089 497 aa24.68■■□□□ 1.54
SHMT1-209ENST00000582653 MAP3K21Q5TCX8 1036 aa24.68■■□□□ 1.54
SHMT1-209ENST00000582653 NECAB2Q7Z6G3 386 aa24.68■■□□□ 1.54
SHMT1-209ENST00000582653 PLEKHH3Q7Z736 793 aa24.68■■□□□ 1.54
SHMT1-209ENST00000582653 DYNLL2Q96FJ2 89 aa24.68■■□□□ 1.54
SHMT1-209ENST00000582653 ATP8A2Q9NTI2 1148 aa24.68■■□□□ 1.54
SHMT1-209ENST00000582653 MPHOSPH10O00566 681 aaKnown RBP24.67■■□□□ 1.54
SHMT1-209ENST00000582653 CNMDO75829 334 aa24.67■■□□□ 1.54
SHMT1-209ENST00000582653 CCNA1P78396 465 aa24.67■■□□□ 1.54
SHMT1-209ENST00000582653 PUS7LQ9H0K6 701 aaKnown RBP24.67■■□□□ 1.54
SHMT1-209ENST00000582653 SWAP70Q9UH65 585 aa24.67■■□□□ 1.54
SHMT1-209ENST00000582653 PLXNB2O15031 1838 aa24.67■■□□□ 1.54
SHMT1-209ENST00000582653 CYP2D7A0A087X1C5 515 aa24.66■■□□□ 1.54
SHMT1-209ENST00000582653 RGS2P41220 211 aa24.66■■□□□ 1.54
SHMT1-209ENST00000582653 CHRDL2Q6WN34 429 aa24.66■■□□□ 1.54
SHMT1-209ENST00000582653 A0A1W2PRG0 241 aa24.65■■□□□ 1.54
SHMT1-209ENST00000582653 EVI5O60447 810 aa24.65■■□□□ 1.54
SHMT1-209ENST00000582653 GLRX3O76003 335 aaKnown RBP24.65■■□□□ 1.54
SHMT1-209ENST00000582653 RRP1P56182 461 aaKnown RBP24.65■■□□□ 1.54
SHMT1-209ENST00000582653 RPAP3Q9H6T3 665 aaPredicted RBP24.65■■□□□ 1.54
SHMT1-209ENST00000582653 SLC4A4Q9Y6R1 1079 aa24.65■■□□□ 1.54
SHMT1-209ENST00000582653 USP17L12C9JPN9 530 aa24.64■■□□□ 1.54
SHMT1-209ENST00000582653 USP17L21D6R901 530 aa24.64■■□□□ 1.54
SHMT1-209ENST00000582653 ZSCAN25Q6NSZ9 544 aa24.64■■□□□ 1.54
SHMT1-209ENST00000582653 TMEM179Q6ZVK1 233 aa24.64■■□□□ 1.54
SHMT1-209ENST00000582653 HOXC10Q9NYD6 342 aa24.64■■□□□ 1.54
SHMT1-209ENST00000582653 RBM27Q9P2N5 1060 aaKnown RBP24.64■■□□□ 1.54
SHMT1-209ENST00000582653 OGDHLQ9ULD0 1010 aa24.64■■□□□ 1.54
SHMT1-209ENST00000582653 PRKAR2AP13861 404 aaKnown RBP24.63■■□□□ 1.53
SHMT1-209ENST00000582653 ZKSCAN1P17029 563 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-209ENST00000582653 CACNB2Q08289 660 aaPredicted RBP24.63■■□□□ 1.53
SHMT1-209ENST00000582653 MAP2K5Q13163 448 aa24.63■■□□□ 1.53
SHMT1-209ENST00000582653 COG2Q14746 738 aa24.63■■□□□ 1.53
SHMT1-209ENST00000582653 C12orf60Q5U649 245 aa24.63■■□□□ 1.53
SHMT1-209ENST00000582653 YTHDC1Q96MU7 727 aaKnown RBP24.63■■□□□ 1.53
SHMT1-209ENST00000582653 NBPF3Q9H094 633 aa24.63■■□□□ 1.53
SHMT1-209ENST00000582653 PRO3102Q9H379 93 aa24.63■■□□□ 1.53
SHMT1-209ENST00000582653 CWC22Q9HCG8 908 aaKnown RBP24.63■■□□□ 1.53
SHMT1-209ENST00000582653 BTBD7Q9P203 1132 aa24.63■■□□□ 1.53
SHMT1-209ENST00000582653 PTPREP23469 700 aa24.62■■□□□ 1.53
SHMT1-209ENST00000582653 MNX1P50219 401 aaPredicted RBP24.62■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms