RNA–Protein interactions for RNA: ENST00000582594.5

PPP4R1-222, Transcript of protein phosphatase 4 regulatory subunit 1, human

TSL 1 (best)

Gene PPP4R1, Length 2,982 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PPP4R1-222	ENST00000582594	EIF3C	Q99613	913 aa	Known RBP	10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	TAB2	Q9NYJ8	693 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	MYO6	Q9UM54	1294 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	CAMTA1	Q9Y6Y1	1673 aa		10.84	□□□□□ -0.67
PPP4R1-222	ENST00000582594	N4BP3	O15049	544 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SRGAP2	O75044	1071 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	RNF40	O75150	1001 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PDE6A	P16499	860 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ARHGAP25	P42331	645 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	IFIT5	Q13325	482 aa	Known RBP	10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CUL4B	Q13620	913 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TRIM22	Q8IYM9	498 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PAGE5	Q96GU1	130 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CAPZA3	Q96KX2	299 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TTF2	Q9UNY4	1162 aa	Known RBP	10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	LAMB4	A4D0S4	1761 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	IFNAR1	P17181	557 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	NOM1	Q5C9Z4	860 aa	Known RBP	10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	EARS2	Q5JPH6	523 aa	Known RBP	10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	KANK3	Q6NY19	840 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	LDHAL6A	Q6ZMR3	332 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CNGA4	Q8IV77	575 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ELOA2	Q8IYF1	753 aa	Predicted RBP	10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GOLGA6L1	Q8N7Z2	621 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	WASF1	Q92558	559 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CHP1	Q99653	195 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	NAPB	Q9H115	298 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ARMT1	Q9H993	441 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MAPK8IP1	Q9UQF2	711 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	KIF1A	Q12756	1690 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PPP1R3G	B7ZBB8	358 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	WNT7A	O00755	349 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PRKAB2	O43741	272 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PRDM1	O75626	825 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PHKA1	P46020	1223 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	KRT31	Q15323	416 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	WHAMMP3	Q1A5X7	153 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TTC31	Q49AM3	519 aa	Predicted RBP	10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CDKAL1	Q5VV42	579 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SGMS1	Q86VZ5	419 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	HELB	Q8NG08	1087 aa	Predicted RBP	10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SYMPK	Q92797	1274 aa	Known RBP	10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GBP3	Q9H0R5	595 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	RABEP2	Q9H5N1	569 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	EFCC1	Q9HA90	598 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CNNM1	Q9NRU3	951 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ABHD10	Q9NUJ1	306 aa		10.83	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MBD4	O95243	580 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PIP4K2B	P78356	416 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	IFNL3	Q8IZI9	196 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SPATA20	Q8TB22	786 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	STRBP	Q96SI9	672 aa	Known RBP	10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	FOXP1	Q9H334	677 aa	Predicted RBP	10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	STRN4	Q9NRL3	753 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	VPS54	Q9P1Q0	977 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	STK36	Q9NRP7	1315 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PES1	O00541	588 aa	Known RBP	10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GPT	P24298	496 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	KRT9	P35527	623 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ZNF174	Q15697	407 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	RRAGB	Q5VZM2	374 aa		10.82	□□□□□ -0.68
PPP4R1-222	ENST00000582594	STRCP1	A6NGW2	1772 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SYF2	O95926	243 aa	Known RBP	10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MAGEA9	P43362	315 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GTF2A1	P52655	376 aa	Predicted RBP	10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	WTAP	Q15007	396 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	PPP1R3F	Q6ZSY5	799 aa	Predicted RBP	10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TMTC1	Q8IUR5	882 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ZNF579	Q8NAF0	562 aa	Known RBP	10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CCDC148	Q8NFR7	591 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	AFAP1L1	Q8TED9	768 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SHISA4	Q96DD7	197 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CTAGE1	Q96RT6	745 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MMS19	Q96T76	1030 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	SNAP23	O00161	211 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	LIFR	P42702	1097 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	AMPD2	Q01433	879 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CYP26C1	Q6V0L0	522 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MFSD6	Q6ZSS7	791 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MAGEB6	Q8N7X4	407 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ACBD3	Q9H3P7	528 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	GREM2	Q9H772	168 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	CEP131	Q9UPN4	1083 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TBC1D2B	Q9UPU7	963 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	AKAP11	Q9UKA4	1901 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TMEM94	Q12767	1356 aa		10.81	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TRIM75P	A6NK02	468 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	DEXI	O95424	95 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ATP1A1	P05023	1023 aa	Known RBP	10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	ITGA6	P23229	1130 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	COPB1	P53618	953 aa	Known RBP	10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	REXO2	Q9Y3B8	237 aa	Known RBP	10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	RIC1	Q4ADV7	1423 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	NUP188	Q5SRE5	1749 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	MAP3K15	Q6ZN16	1313 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	RPS6KA5	O75582	802 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	TUBB2A	Q13885	445 aa		10.8	□□□□□ -0.68
PPP4R1-222	ENST00000582594	UBE3C	Q15386	1083 aa		10.8	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms