RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 USP17L3A6NCW0 530 aa12.75□□□□□ -0.37
SS18-221ENST00000582448 USP17L4A6NCW7 530 aa12.75□□□□□ -0.37
SS18-221ENST00000582448 IRS4O14654 1257 aaPredicted RBP12.75□□□□□ -0.37
SS18-221ENST00000582448 VIL1P09327 827 aaKnown RBP12.75□□□□□ -0.37
SS18-221ENST00000582448 SMTNP53814 917 aa12.75□□□□□ -0.37
SS18-221ENST00000582448 MVPQ14764 893 aaKnown RBP12.75□□□□□ -0.37
SS18-221ENST00000582448 GNASQ5JWF2 1037 aa12.75□□□□□ -0.37
SS18-221ENST00000582448 ANGEL2Q5VTE6 544 aaKnown RBP12.75□□□□□ -0.37
SS18-221ENST00000582448 USP17L2Q6R6M4 530 aa12.75□□□□□ -0.37
SS18-221ENST00000582448 USP17L1Q7RTZ2 530 aa12.75□□□□□ -0.37
SS18-221ENST00000582448 CTU1Q7Z7A3 348 aaKnown RBP12.75□□□□□ -0.37
SS18-221ENST00000582448 PLEKHM2Q8IWE5 1019 aa12.75□□□□□ -0.37
SS18-221ENST00000582448 TSPYL6Q8N831 410 aa12.75□□□□□ -0.37
SS18-221ENST00000582448 RTL9Q8NET4 1388 aa12.75□□□□□ -0.37
SS18-221ENST00000582448 HDAC9Q9UKV0 1011 aa12.75□□□□□ -0.37
SS18-221ENST00000582448 UFL1O94874 794 aa12.74□□□□□ -0.37
SS18-221ENST00000582448 THBS1P07996 1170 aa12.74□□□□□ -0.37
SS18-221ENST00000582448 TRIM27P14373 513 aa12.74□□□□□ -0.37
SS18-221ENST00000582448 GAS6Q14393 721 aa12.74□□□□□ -0.37
SS18-221ENST00000582448 MOB2Q70IA6 237 aa12.74□□□□□ -0.37
SS18-221ENST00000582448 CENPQQ7L2Z9 268 aaPredicted RBP12.74□□□□□ -0.37
SS18-221ENST00000582448 ITPRIPQ8IWB1 547 aa12.74□□□□□ -0.37
SS18-221ENST00000582448 RHBDD1Q8TEB9 315 aa12.74□□□□□ -0.37
SS18-221ENST00000582448 ISCA1Q9BUE6 129 aa12.74□□□□□ -0.37
SS18-221ENST00000582448 SEC31BQ9NQW1 1179 aa12.74□□□□□ -0.37
SS18-221ENST00000582448 POLR2AP24928 1970 aaKnown RBP12.73□□□□□ -0.37
SS18-221ENST00000582448 GPR25O00155 361 aa12.73□□□□□ -0.37
SS18-221ENST00000582448 TBC1D8O95759 1140 aa12.73□□□□□ -0.37
SS18-221ENST00000582448 F11P03951 625 aa12.73□□□□□ -0.37
SS18-221ENST00000582448 CCDC30Q5VVM6 783 aa12.73□□□□□ -0.37
SS18-221ENST00000582448 PRAMEF18Q5VWM3 479 aa12.73□□□□□ -0.37
SS18-221ENST00000582448 RASAL3Q86YV0 1011 aa12.73□□□□□ -0.37
SS18-221ENST00000582448 SERBP1Q8NC51 408 aaKnown RBP eCLIP12.73□□□□□ -0.37
SS18-221ENST00000582448 JARID2Q92833 1246 aaPredicted RBP12.73□□□□□ -0.37
SS18-221ENST00000582448 GPAMQ9HCL2 828 aa12.73□□□□□ -0.37
SS18-221ENST00000582448 GGA1Q9UJY5 639 aa12.73□□□□□ -0.37
SS18-221ENST00000582448 KIAA1024Q9UPX6 916 aa12.73□□□□□ -0.37
SS18-221ENST00000582448 USP3Q9Y6I4 520 aa12.73□□□□□ -0.37
SS18-221ENST00000582448 LAMB2P55268 1798 aa12.72□□□□□ -0.37
SS18-221ENST00000582448 PTPRCP08575 1304 aa12.72□□□□□ -0.37
SS18-221ENST00000582448 UBE2Q2LH0YL09 131 aa12.72□□□□□ -0.37
SS18-221ENST00000582448 ZBTB7BO15156 539 aaPredicted RBP12.72□□□□□ -0.37
SS18-221ENST00000582448 DBF4Q9UBU7 674 aaPredicted RBP12.72□□□□□ -0.37
SS18-221ENST00000582448 DUOX1Q9NRD9 1551 aa12.72□□□□□ -0.37
SS18-221ENST00000582448 ANKRD36CQ5JPF3 1778 aa12.71□□□□□ -0.37
SS18-221ENST00000582448 HOXB7P09629 217 aa12.71□□□□□ -0.37
SS18-221ENST00000582448 ZNF295-AS1Q8N0V1 137 aa12.71□□□□□ -0.37
SS18-221ENST00000582448 GTPBP3Q969Y2 492 aaKnown RBP12.71□□□□□ -0.37
SS18-221ENST00000582448 GMCL1Q96IK5 515 aa12.71□□□□□ -0.37
SS18-221ENST00000582448 ZNF358Q9NW07 568 aa12.71□□□□□ -0.37
SS18-221ENST00000582448 TFIP11Q9UBB9 837 aaKnown RBP12.71□□□□□ -0.37
SS18-221ENST00000582448 A0A1B0GTH6 734 aa12.7□□□□□ -0.38
SS18-221ENST00000582448 A6NJY4 79 aa12.7□□□□□ -0.38
SS18-221ENST00000582448 CLDN10P78369 228 aa12.7□□□□□ -0.38
SS18-221ENST00000582448 MTFR1Q15390 333 aa12.7□□□□□ -0.38
SS18-221ENST00000582448 AGBL3Q8NEM8 1001 aa12.7□□□□□ -0.38
SS18-221ENST00000582448 ZNF296Q8WUU4 475 aaPredicted RBP12.7□□□□□ -0.38
SS18-221ENST00000582448 MYD88Q99836 296 aa12.7□□□□□ -0.38
SS18-221ENST00000582448 RWDD1Q9H446 243 aaPredicted RBP12.7□□□□□ -0.38
SS18-221ENST00000582448 MYOZ2Q9NPC6 264 aa12.7□□□□□ -0.38
SS18-221ENST00000582448 HYPKQ9NX55 129 aa12.7□□□□□ -0.38
SS18-221ENST00000582448 IQSEC3Q9UPP2 1182 aaPredicted RBP12.7□□□□□ -0.38
SS18-221ENST00000582448 H7C1W4 665 aa12.69□□□□□ -0.38
SS18-221ENST00000582448 RLBP1P12271 317 aa12.69□□□□□ -0.38
SS18-221ENST00000582448 MSX1P28360 303 aa12.69□□□□□ -0.38
SS18-221ENST00000582448 PLA2G4AP47712 749 aa12.69□□□□□ -0.38
SS18-221ENST00000582448 ZNF280AP59817 542 aaPredicted RBP12.69□□□□□ -0.38
SS18-221ENST00000582448 PRKG1Q13976 671 aa12.69□□□□□ -0.38
SS18-221ENST00000582448 CCDC152Q4G0S7 254 aa12.69□□□□□ -0.38
SS18-221ENST00000582448 TMEM57Q8N5G2 664 aa12.69□□□□□ -0.38
SS18-221ENST00000582448 ZBTB38Q8NAP3 1195 aaPredicted RBP12.69□□□□□ -0.38
SS18-221ENST00000582448 PODXL2Q9NZ53 605 aa12.69□□□□□ -0.38
SS18-221ENST00000582448 PKN2Q16513 984 aaKnown RBP12.68□□□□□ -0.38
SS18-221ENST00000582448 ANKRD18AQ8IVF6 992 aa12.68□□□□□ -0.38
SS18-221ENST00000582448 CALR3Q96L12 384 aaKnown RBP12.68□□□□□ -0.38
SS18-221ENST00000582448 MXD3Q9BW11 206 aa12.68□□□□□ -0.38
SS18-221ENST00000582448 NUCKS1Q9H1E3 243 aaKnown RBP12.68□□□□□ -0.38
SS18-221ENST00000582448 PHAXQ9H814 394 aaKnown RBP12.68□□□□□ -0.38
SS18-221ENST00000582448 COL4A1P02462 1669 aa12.67□□□□□ -0.38
SS18-221ENST00000582448 WTIPA6NIX2 430 aaPredicted RBP12.67□□□□□ -0.38
SS18-221ENST00000582448 PDE8AO60658 829 aa12.67□□□□□ -0.38
SS18-221ENST00000582448 HSP90B1P14625 803 aaKnown RBP12.67□□□□□ -0.38
SS18-221ENST00000582448 ATP2B4P23634 1241 aa12.67□□□□□ -0.38
SS18-221ENST00000582448 FKBP1BP68106 108 aa12.67□□□□□ -0.38
SS18-221ENST00000582448 TRIM28Q13263 835 aaKnown RBP12.67□□□□□ -0.38
SS18-221ENST00000582448 NBPF9Q3BBW0 867 aa12.67□□□□□ -0.38
SS18-221ENST00000582448 RUBCNLQ9H714 662 aa12.67□□□□□ -0.38
SS18-221ENST00000582448 TNNQ9UQP3 1299 aa12.67□□□□□ -0.38
SS18-221ENST00000582448 MAFBQ9Y5Q3 323 aaPredicted RBP12.67□□□□□ -0.38
SS18-221ENST00000582448 AKAP11Q9UKA4 1901 aa12.66□□□□□ -0.38
SS18-221ENST00000582448 PALM3A6NDB9 673 aaPredicted RBP12.66□□□□□ -0.38
SS18-221ENST00000582448 CDK2AP1O14519 115 aa12.66□□□□□ -0.38
SS18-221ENST00000582448 NF2P35240 595 aa12.66□□□□□ -0.38
SS18-221ENST00000582448 TRIM50Q86XT4 487 aa12.66□□□□□ -0.38
SS18-221ENST00000582448 TPCN2Q8NHX9 752 aa12.66□□□□□ -0.38
SS18-221ENST00000582448 WHAMMQ8TF30 809 aa12.66□□□□□ -0.38
SS18-221ENST00000582448 GMLQ99445 158 aa12.66□□□□□ -0.38
SS18-221ENST00000582448 DDX60Q8IY21 1712 aaKnown RBP12.65□□□□□ -0.38
SS18-221ENST00000582448 XDHP47989 1333 aa12.65□□□□□ -0.38
SS18-221ENST00000582448 SLURP2P0DP57 97 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms