RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 EXOC6BQ9Y2D4 811 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 NDUFB9Q9Y6M9 179 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 CDK5RAP2Q96SN8 1893 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 FOCADQ5VW36 1801 aa12.9□□□□□ -0.34
RFFL-209ENST00000581265 USP17L15C9J2P7 530 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 USP17L13C9JLJ4 530 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 USP17L11C9JVI0 530 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 USP17L18D6R9N7 530 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 USP17L22D6RA61 530 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 USP17L17D6RBQ6 530 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 USP17L19D6RCP7 530 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 USP17L20D6RJB6 530 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 USP17L24Q0WX57 530 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 CERKLQ49MI3 558 aaPredicted RBP12.89□□□□□ -0.35
RFFL-209ENST00000581265 MORN1Q5T089 497 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 CCAR1Q8IX12 1150 aaKnown RBP12.89□□□□□ -0.35
RFFL-209ENST00000581265 RHPN1Q8TCX5 695 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 PANK1Q8TE04 598 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 RIOK1Q9BRS2 568 aaKnown RBP12.89□□□□□ -0.35
RFFL-209ENST00000581265 PORCNQ9H237 461 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 C11orf49Q9H6J7 331 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 RABGAP1Q9Y3P9 1069 aa12.89□□□□□ -0.35
RFFL-209ENST00000581265 PRKAR2AP13861 404 aaKnown RBP12.88□□□□□ -0.35
RFFL-209ENST00000581265 COL9A1P20849 921 aa12.88□□□□□ -0.35
RFFL-209ENST00000581265 PLCD1P51178 756 aa12.88□□□□□ -0.35
RFFL-209ENST00000581265 USP14P54578 494 aa12.88□□□□□ -0.35
RFFL-209ENST00000581265 PDE3AQ14432 1141 aa12.88□□□□□ -0.35
RFFL-209ENST00000581265 TTF1Q15361 905 aaPredicted RBP12.88□□□□□ -0.35
RFFL-209ENST00000581265 ABCB5Q2M3G0 1257 aa12.88□□□□□ -0.35
RFFL-209ENST00000581265 CATSPERGQ6ZRH7 1159 aa12.88□□□□□ -0.35
RFFL-209ENST00000581265 GPR142Q7Z601 462 aa12.88□□□□□ -0.35
RFFL-209ENST00000581265 PLEKHH3Q7Z736 793 aa12.88□□□□□ -0.35
RFFL-209ENST00000581265 SYMPKQ92797 1274 aaKnown RBP12.88□□□□□ -0.35
RFFL-209ENST00000581265 PAGR1Q9BTK6 254 aa12.88□□□□□ -0.35
RFFL-209ENST00000581265 PLXNB2O15031 1838 aa12.88□□□□□ -0.35
RFFL-209ENST00000581265 MS4A1P11836 297 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 SHMT1P34896 483 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 RGS2P41220 211 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 GABPAQ06546 454 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 CACNB2Q08289 660 aaPredicted RBP12.87□□□□□ -0.35
RFFL-209ENST00000581265 RAB3GAP1Q15042 981 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 SLC9C2Q5TAH2 1124 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 ZNF697Q5TEC3 545 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 FAM109BQ6ICB4 259 aaPredicted RBP12.87□□□□□ -0.35
RFFL-209ENST00000581265 LBX2Q6XYB7 198 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 RPAP2Q8IXW5 612 aaPredicted RBP12.87□□□□□ -0.35
RFFL-209ENST00000581265 ACER1Q8TDN7 264 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.87□□□□□ -0.35
RFFL-209ENST00000581265 GUCD1Q96NT3 240 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 FEZ1Q99689 392 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 IL1RAPL2Q9NP60 686 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 CABP5Q9NP86 173 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 A0A0C4DFX4 3053 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 ZBED9Q6R2W3 1325 aa12.87□□□□□ -0.35
RFFL-209ENST00000581265 MYH1P12882 1939 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 MAGEB6P1A0A0J9YX57 407 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 CNMDO75829 334 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 GLRX3O76003 335 aaKnown RBP12.86□□□□□ -0.35
RFFL-209ENST00000581265 POLR3DP05423 398 aaPredicted RBP12.86□□□□□ -0.35
RFFL-209ENST00000581265 ZKSCAN1P17029 563 aaPredicted RBP12.86□□□□□ -0.35
RFFL-209ENST00000581265 VCAM1P19320 739 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 GUCY1A2P33402 732 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 CCNA1P78396 465 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 MAP2K5Q13163 448 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 ZYXQ15942 572 aaKnown RBP12.86□□□□□ -0.35
RFFL-209ENST00000581265 CCL14Q16627 93 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 LHX8Q68G74 356 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 CLASRPQ8N2M8 674 aaKnown RBP12.86□□□□□ -0.35
RFFL-209ENST00000581265 KIF1BPQ96EK5 621 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 EDC3Q96F86 508 aaKnown RBP12.86□□□□□ -0.35
RFFL-209ENST00000581265 CRNKL1Q9BZJ0 848 aaKnown RBP12.86□□□□□ -0.35
RFFL-209ENST00000581265 COL6A3P12111 3177 aa12.86□□□□□ -0.35
RFFL-209ENST00000581265 COL6A1P12109 1028 aa12.85□□□□□ -0.35
RFFL-209ENST00000581265 PDE6AP16499 860 aa12.85□□□□□ -0.35
RFFL-209ENST00000581265 MDM2Q00987 491 aaPredicted RBP12.85□□□□□ -0.35
RFFL-209ENST00000581265 SIRT2Q8IXJ6 389 aa12.85□□□□□ -0.35
RFFL-209ENST00000581265 MAFAQ8NHW3 353 aaPredicted RBP12.85□□□□□ -0.35
RFFL-209ENST00000581265 APBA2Q99767 749 aa12.85□□□□□ -0.35
RFFL-209ENST00000581265 ZBTB40Q9NUA8 1239 aa12.85□□□□□ -0.35
RFFL-209ENST00000581265 MCM9Q9NXL9 1143 aa12.85□□□□□ -0.35
RFFL-209ENST00000581265 TCRBV5S4A2TA0A5A2 114 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 SLC15A5A6NIM6 579 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 POTEB2H3BUK9 544 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 GOLIM4O00461 696 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 RAB11FIP3O75154 756 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 HMMRO75330 724 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 HOXC6P09630 235 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 IFIT2P09913 472 aaKnown RBP12.84□□□□□ -0.35
RFFL-209ENST00000581265 PTPREP23469 700 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 CCND3P30281 292 aaPredicted RBP12.84□□□□□ -0.35
RFFL-209ENST00000581265 SEPT2Q15019 361 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 LBHD1Q9BQE6 289 aaPredicted RBP12.84□□□□□ -0.35
RFFL-209ENST00000581265 DCP1AQ9NPI6 582 aaPredicted RBP12.84□□□□□ -0.35
RFFL-209ENST00000581265 HOXC10Q9NYD6 342 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 BTBD7Q9P203 1132 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 PFASO15067 1338 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 ZNF532Q9HCE3 1301 aa12.84□□□□□ -0.35
RFFL-209ENST00000581265 SPDYE16A6NNV3 312 aaPredicted RBP12.83□□□□□ -0.36
RFFL-209ENST00000581265 COG2Q14746 738 aa12.83□□□□□ -0.36
RFFL-209ENST00000581265 MFSD14CQ5VZR4 134 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms