RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 CDK8P49336 464 aa17.79■□□□□ 0.44
SS18-212ENST00000579061 FCGRTP55899 365 aa17.79■□□□□ 0.44
SS18-212ENST00000579061 IRX3P78415 501 aaPredicted RBP17.79■□□□□ 0.44
SS18-212ENST00000579061 NUCB1Q02818 461 aa17.79■□□□□ 0.44
SS18-212ENST00000579061 TMEM179Q6ZVK1 233 aa17.79■□□□□ 0.44
SS18-212ENST00000579061 CHD1LQ86WJ1 897 aa17.79■□□□□ 0.44
SS18-212ENST00000579061 SLC44A5Q8NCS7 719 aa17.79■□□□□ 0.44
SS18-212ENST00000579061 FEZ1Q99689 392 aa17.79■□□□□ 0.44
SS18-212ENST00000579061 PTCH2Q9Y6C5 1203 aa17.79■□□□□ 0.44
SS18-212ENST00000579061 CYP2D7A0A087X1C5 515 aa17.78■□□□□ 0.44
SS18-212ENST00000579061 M0R2C6 588 aa17.78■□□□□ 0.44
SS18-212ENST00000579061 SEPT2Q15019 361 aa17.78■□□□□ 0.44
SS18-212ENST00000579061 NBPF11Q86T75 865 aa17.78■□□□□ 0.44
SS18-212ENST00000579061 GTF3C2Q8WUA4 911 aaPredicted RBP17.78■□□□□ 0.44
SS18-212ENST00000579061 RBBP6Q7Z6E9 1792 aaKnown RBP17.78■□□□□ 0.44
SS18-212ENST00000579061 PATL2C9JE40 543 aaKnown RBP17.77■□□□□ 0.44
SS18-212ENST00000579061 MPHOSPH10O00566 681 aaKnown RBP17.77■□□□□ 0.44
SS18-212ENST00000579061 SOX10P56693 466 aa17.77■□□□□ 0.44
SS18-212ENST00000579061 SLC9C1Q4G0N8 1177 aa17.77■□□□□ 0.44
SS18-212ENST00000579061 B4GALNT3Q6L9W6 998 aa17.77■□□□□ 0.44
SS18-212ENST00000579061 ANKRD13CQ8N6S4 541 aa17.77■□□□□ 0.44
SS18-212ENST00000579061 ACER1Q8TDN7 264 aa17.77■□□□□ 0.44
SS18-212ENST00000579061 OSBPL3Q9H4L5 887 aa17.77■□□□□ 0.44
SS18-212ENST00000579061 MORF4L1Q9UBU8 362 aa17.77■□□□□ 0.44
SS18-212ENST00000579061 KIAA0100Q14667 2235 aaKnown RBP17.77■□□□□ 0.44
SS18-212ENST00000579061 ROBO3Q96MS0 1386 aa17.77■□□□□ 0.43
SS18-212ENST00000579061 SEC62Q99442 399 aaKnown RBP17.76■□□□□ 0.43
SS18-212ENST00000579061 P2RX7Q99572 595 aaKnown RBP17.76■□□□□ 0.43
SS18-212ENST00000579061 CENPFP49454 3210 aa17.76■□□□□ 0.43
SS18-212ENST00000579061 MYPNQ86TC9 1320 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 GREB1LQ9C091 1923 aaPredicted RBP17.75■□□□□ 0.43
SS18-212ENST00000579061 USP17L15C9J2P7 530 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 USP17L13C9JLJ4 530 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 USP17L11C9JVI0 530 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 USP17L18D6R9N7 530 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 USP17L22D6RA61 530 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 USP17L17D6RBQ6 530 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 USP17L19D6RCP7 530 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 USP17L20D6RJB6 530 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 SMIM22K7EJ46 135 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 AKR1B1P15121 316 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 TDO2P48775 406 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 HERVK_113P62684 666 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 MLLT1Q03111 559 aaPredicted RBP17.75■□□□□ 0.43
SS18-212ENST00000579061 USP17L24Q0WX57 530 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 IFNL3Q8IZI9 196 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 ZNF333Q96JL9 665 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 NACAP1Q9BZK3 213 aa17.75■□□□□ 0.43
SS18-212ENST00000579061 EPB41L4AQ9HCS5 686 aaPredicted RBP17.75■□□□□ 0.43
SS18-212ENST00000579061 TNPO2O14787 897 aaKnown RBP17.74■□□□□ 0.43
SS18-212ENST00000579061 APPP05067 770 aa17.74■□□□□ 0.43
SS18-212ENST00000579061 VCAM1P19320 739 aa17.74■□□□□ 0.43
SS18-212ENST00000579061 ZYXQ15942 572 aaKnown RBP17.74■□□□□ 0.43
SS18-212ENST00000579061 CATSPERGQ6ZRH7 1159 aa17.74■□□□□ 0.43
SS18-212ENST00000579061 PLEKHM2Q8IWE5 1019 aa17.74■□□□□ 0.43
SS18-212ENST00000579061 RAET1EQ8TD07 263 aa17.74■□□□□ 0.43
SS18-212ENST00000579061 SH2D4AQ9H788 454 aa17.74■□□□□ 0.43
SS18-212ENST00000579061 ZNF287Q9HBT7 754 aa17.74■□□□□ 0.43
SS18-212ENST00000579061 ARHGEF10LQ9HCE6 1279 aa17.74■□□□□ 0.43
SS18-212ENST00000579061 HELLSQ9NRZ9 838 aa17.74■□□□□ 0.43
SS18-212ENST00000579061 A0A1W2PRG0 241 aa17.73■□□□□ 0.43
SS18-212ENST00000579061 MINDY4BA8MYZ0 360 aa17.73■□□□□ 0.43
SS18-212ENST00000579061 ICA1Q05084 483 aa17.73■□□□□ 0.43
SS18-212ENST00000579061 LBX2Q6XYB7 198 aa17.73■□□□□ 0.43
SS18-212ENST00000579061 COA7Q96BR5 231 aa17.73■□□□□ 0.43
SS18-212ENST00000579061 KANSL2Q9H9L4 492 aa17.73■□□□□ 0.43
SS18-212ENST00000579061 TMX2Q9Y320 296 aa17.73■□□□□ 0.43
SS18-212ENST00000579061 ECM2O94769 699 aaPredicted RBP17.72■□□□□ 0.43
SS18-212ENST00000579061 RASA1P20936 1047 aa17.72■□□□□ 0.43
SS18-212ENST00000579061 GRK4P32298 578 aa17.72■□□□□ 0.43
SS18-212ENST00000579061 PRKCZQ05513 592 aa17.72■□□□□ 0.43
SS18-212ENST00000579061 IRF5Q13568 498 aa17.72■□□□□ 0.43
SS18-212ENST00000579061 SIAH1Q8IUQ4 282 aa17.72■□□□□ 0.43
SS18-212ENST00000579061 GPRC5AQ8NFJ5 357 aa17.72■□□□□ 0.43
SS18-212ENST00000579061 LPAR1Q92633 364 aa17.72■□□□□ 0.43
SS18-212ENST00000579061 NAPBQ9H115 298 aa17.72■□□□□ 0.43
SS18-212ENST00000579061 MKNK2Q9HBH9 465 aa17.72■□□□□ 0.43
SS18-212ENST00000579061 RBPJLQ9UBG7 517 aa17.72■□□□□ 0.43
SS18-212ENST00000579061 TRIM6-TRIM34B2RNG4 842 aa17.71■□□□□ 0.43
SS18-212ENST00000579061 FLT3LGP49771 235 aa17.71■□□□□ 0.43
SS18-212ENST00000579061 SLAIN1Q8ND83 568 aa17.71■□□□□ 0.43
SS18-212ENST00000579061 TMEM106CQ9BVX2 250 aa17.71■□□□□ 0.43
SS18-212ENST00000579061 RPAP3Q9H6T3 665 aaPredicted RBP17.71■□□□□ 0.43
SS18-212ENST00000579061 GABRQQ9UN88 632 aa17.71■□□□□ 0.43
SS18-212ENST00000579061 RABGAP1Q9Y3P9 1069 aa17.71■□□□□ 0.43
SS18-212ENST00000579061 RLFQ13129 1914 aa17.7■□□□□ 0.42
SS18-212ENST00000579061 SLC3A2P08195 630 aaKnown RBP17.7■□□□□ 0.42
SS18-212ENST00000579061 ERVK-9P63128 1117 aa17.7■□□□□ 0.42
SS18-212ENST00000579061 ERVK-24P63145 666 aa17.7■□□□□ 0.42
SS18-212ENST00000579061 IRX6P78412 446 aaPredicted RBP17.7■□□□□ 0.42
SS18-212ENST00000579061 PXYLP1Q8TE99 480 aa17.7■□□□□ 0.42
SS18-212ENST00000579061 SH3TC2Q8TF17 1288 aa17.7■□□□□ 0.42
SS18-212ENST00000579061 VCPKMTQ9H867 229 aa17.7■□□□□ 0.42
SS18-212ENST00000579061 TXNRD2Q9NNW7 524 aa17.7■□□□□ 0.42
SS18-212ENST00000579061 MYH4Q9Y623 1939 aa17.69■□□□□ 0.42
SS18-212ENST00000579061 EEF2P13639 858 aaKnown RBP17.69■□□□□ 0.42
SS18-212ENST00000579061 MAPK4P31152 587 aa17.69■□□□□ 0.42
SS18-212ENST00000579061 PDE4BQ07343 736 aa17.69■□□□□ 0.42
SS18-212ENST00000579061 ALX1Q15699 326 aa17.69■□□□□ 0.42
SS18-212ENST00000579061 MCMDC2Q4G0Z9 681 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms