RNA–Protein interactions for RNA: ENST00000578996.1

CDK5RAP3-211, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 566 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-211ENST00000578996 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.13□□□□□ -0.632e-6■■□□□ 13.4
CDK5RAP3-211ENST00000578996 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.13□□□□□ -0.63
CDK5RAP3-211ENST00000578996 TCRBV5S4A2TA0A5A2 114 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 USP17L15C9J2P7 530 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 USP17L13C9JLJ4 530 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 USP17L11C9JVI0 530 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 USP17L18D6R9N7 530 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 USP17L22D6RA61 530 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 USP17L17D6RBQ6 530 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 USP17L19D6RCP7 530 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 USP17L20D6RJB6 530 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 CYP2D6P10635 497 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 ATP5JP18859 108 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 VCAM1P19320 739 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 MAPK4P31152 587 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 ADD2P35612 726 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 USP17L24Q0WX57 530 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 SEPT2Q15019 361 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 Q3C1V9 767 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 SLC44A5Q8NCS7 719 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 GTF3C2Q8WUA4 911 aaPredicted RBP11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 SOCS4Q8WXH5 440 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 TRIB2Q92519 343 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 RPAP3Q9H6T3 665 aaPredicted RBP11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 HMX1Q9NP08 348 aaPredicted RBP11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 DCP1AQ9NPI6 582 aaPredicted RBP11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 PAK6Q9NQU5 681 aaPredicted RBP11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 RBPJLQ9UBG7 517 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 GJD2Q9UKL4 321 aa11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 COLQQ9Y215 455 aaPredicted RBP11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 DDX60LQ5H9U9 1706 aaKnown RBP11.12□□□□□ -0.63
CDK5RAP3-211ENST00000578996 PRKAB2O43741 272 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 CHGBP05060 677 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 ZKSCAN1P17029 563 aaPredicted RBP11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 CHRDL2Q6WN34 429 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 GPR142Q7Z601 462 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 UBE2Q1Q7Z7E8 422 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 AMOTL1Q8IY63 956 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 DYNLL2Q96FJ2 89 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 DDRGK1Q96HY6 314 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 C12orf42Q96LP6 360 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 HAUS7Q99871 368 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 KIAA1683Q9H0B3 1180 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 PORCNQ9H237 461 aa11.11□□□□□ -0.63
CDK5RAP3-211ENST00000578996 RPTORQ8N122 1335 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 EVI5O60447 810 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 PRKAR2AP13861 404 aaKnown RBP11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 GUCY1A2P33402 732 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 RGS2P41220 211 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 CCNA1P78396 465 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 GABPAQ06546 454 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 ZSCAN25Q6NSZ9 544 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 SAMD1Q6SPF0 538 aaPredicted RBP11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 CATSPERGQ6ZRH7 1159 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 PLEKHH3Q7Z736 793 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 DIS3LQ8TF46 1054 aaKnown RBP11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 PAWRQ96IZ0 340 aaKnown RBP11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 TANGO6Q9C0B7 1094 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 SWAP70Q9UH65 585 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 RABGAP1Q9Y3P9 1069 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 NR2E3Q9Y5X4 410 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 SLC4A4Q9Y6R1 1079 aa11.1□□□□□ -0.63
CDK5RAP3-211ENST00000578996 CYP2D7A0A087X1C5 515 aa11.09□□□□□ -0.63
CDK5RAP3-211ENST00000578996 CNMDO75829 334 aa11.09□□□□□ -0.63
CDK5RAP3-211ENST00000578996 CCL14Q16627 93 aa11.09□□□□□ -0.63
CDK5RAP3-211ENST00000578996 TSHZ3Q63HK5 1081 aa11.09□□□□□ -0.63
CDK5RAP3-211ENST00000578996 POTEEQ6S8J3 1075 aa11.09□□□□□ -0.63
CDK5RAP3-211ENST00000578996 TMEM179Q6ZVK1 233 aa11.09□□□□□ -0.63
CDK5RAP3-211ENST00000578996 NECAB2Q7Z6G3 386 aa11.09□□□□□ -0.63
CDK5RAP3-211ENST00000578996 GPATCH3Q96I76 525 aa11.09□□□□□ -0.63
CDK5RAP3-211ENST00000578996 ATP8A2Q9NTI2 1148 aa11.09□□□□□ -0.63
CDK5RAP3-211ENST00000578996 IVNS1ABPQ9Y6Y0 642 aa11.09□□□□□ -0.63
CDK5RAP3-211ENST00000578996 A0A1W2PRG0 241 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 SPDYE16A6NNV3 312 aaPredicted RBP11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 USP17L12C9JPN9 530 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 USP17L21D6R901 530 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 RAD21O60216 631 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 GLRX3O76003 335 aaKnown RBP11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 AKR1B1P15121 316 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 ATP2B2Q01814 1243 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 ICA1Q05084 483 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 UBE3CQ15386 1083 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 CLEC10AQ8IUN9 316 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 TRMT44Q8IYL2 757 aaKnown RBP11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 SPICE1Q8N0Z3 855 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 STK11IPQ8N1F8 1099 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 APBA2Q99767 749 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 CRISPLD2Q9H0B8 497 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 PUS7LQ9H0K6 701 aaKnown RBP11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 ARHGEF10LQ9HCE6 1279 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 ECHDC1Q9NTX5 307 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 BTBD7Q9P203 1132 aa11.08□□□□□ -0.64
CDK5RAP3-211ENST00000578996 PLXNB2O15031 1838 aa11.07□□□□□ -0.64
CDK5RAP3-211ENST00000578996 SMIM22K7EJ46 135 aa11.07□□□□□ -0.64
CDK5RAP3-211ENST00000578996 XRCC5P13010 732 aaKnown RBP11.07□□□□□ -0.64
CDK5RAP3-211ENST00000578996 CAPN2P17655 700 aa11.07□□□□□ -0.64
CDK5RAP3-211ENST00000578996 CCND3P30281 292 aaPredicted RBP11.07□□□□□ -0.64
CDK5RAP3-211ENST00000578996 CDK8P49336 464 aa11.07□□□□□ -0.64
CDK5RAP3-211ENST00000578996 FXR1P51114 621 aaKnown RBP eCLIP11.07□□□□□ -0.64
CDK5RAP3-211ENST00000578996 CACNB2Q08289 660 aaPredicted RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms