RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 PRNPP04156 253 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 ITIH2P19823 946 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 SOX9P48436 509 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 MLECQ14165 292 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 NKPD1Q17RQ9 610 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 SFRP5Q5T4F7 317 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 NFXL1Q6ZNB6 911 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 C22orf34Q6ZV56 151 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 NETO1Q8TDF5 533 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 TMEM40Q8WWA1 233 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 SPATA32Q96LK8 384 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 CCDC74BQ96LY2 380 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 TNKS2Q9H2K2 1166 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 CNNM2Q9H8M5 875 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 EFR3BQ9Y2G0 817 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 INPP5FQ9Y2H2 1132 aa8.71□□□□□ -1.02
NUP88-213ENST00000576862 ZNF865P0CJ78 1059 aaPredicted RBP8.7□□□□□ -1.02
NUP88-213ENST00000576862 COL9A2Q14055 689 aaPredicted RBP8.7□□□□□ -1.02
NUP88-213ENST00000576862 ZNF746Q6NUN9 644 aaPredicted RBP8.7□□□□□ -1.02
NUP88-213ENST00000576862 SPACA3Q8IXA5 215 aa8.7□□□□□ -1.02
NUP88-213ENST00000576862 PHACTR4Q8IZ21 702 aa8.7□□□□□ -1.02
NUP88-213ENST00000576862 BSDC1Q9NW68 430 aaPredicted RBP8.7□□□□□ -1.02
NUP88-213ENST00000576862 CCDC39Q9UFE4 941 aa8.7□□□□□ -1.02
NUP88-213ENST00000576862 RGS13O14921 159 aa8.69□□□□□ -1.02
NUP88-213ENST00000576862 UBOX5O94941 541 aa8.69□□□□□ -1.02
NUP88-213ENST00000576862 POLR2BP30876 1174 aaKnown RBP8.69□□□□□ -1.02
NUP88-213ENST00000576862 IFI16Q16666 785 aaKnown RBP8.69□□□□□ -1.02
NUP88-213ENST00000576862 LRRFIP1Q32MZ4 808 aaKnown RBP8.69□□□□□ -1.02
NUP88-213ENST00000576862 ARHGAP27Q6ZUM4 889 aa8.69□□□□□ -1.02
NUP88-213ENST00000576862 NLRC3Q7RTR2 1065 aa8.69□□□□□ -1.02
NUP88-213ENST00000576862 WFDC3Q8IUB2 231 aa8.69□□□□□ -1.02
NUP88-213ENST00000576862 FERD3LQ96RJ6 166 aa8.69□□□□□ -1.02
NUP88-213ENST00000576862 CAPN6Q9Y6Q1 641 aa8.69□□□□□ -1.02
NUP88-213ENST00000576862 NME1P15531 152 aaKnown RBP8.68□□□□□ -1.02
NUP88-213ENST00000576862 RAG1P15918 1043 aa8.68□□□□□ -1.02
NUP88-213ENST00000576862 ETV3P41162 512 aa8.68□□□□□ -1.02
NUP88-213ENST00000576862 CCDC81Q6ZN84 652 aa8.68□□□□□ -1.02
NUP88-213ENST00000576862 RBBP8NLQ8NC74 664 aaPredicted RBP8.68□□□□□ -1.02
NUP88-213ENST00000576862 VWCEQ96DN2 955 aa8.68□□□□□ -1.02
NUP88-213ENST00000576862 Q96M66 194 aa8.68□□□□□ -1.02
NUP88-213ENST00000576862 TINF2Q9BSI4 451 aa8.68□□□□□ -1.02
NUP88-213ENST00000576862 GNAT3A8MTJ3 354 aa8.67□□□□□ -1.02
NUP88-213ENST00000576862 TNFRSF10CO14798 259 aa8.67□□□□□ -1.02
NUP88-213ENST00000576862 CBX7O95931 251 aa8.67□□□□□ -1.02
NUP88-213ENST00000576862 IMPDH2P12268 514 aa8.67□□□□□ -1.02
NUP88-213ENST00000576862 CYP7A1P22680 504 aa8.67□□□□□ -1.02
NUP88-213ENST00000576862 NASPP49321 788 aaPredicted RBP8.67□□□□□ -1.02
NUP88-213ENST00000576862 MFSD4AQ8N468 514 aa8.67□□□□□ -1.02
NUP88-213ENST00000576862 COX4I2Q96KJ9 171 aa8.67□□□□□ -1.02
NUP88-213ENST00000576862 CAPN10Q9HC96 672 aa8.67□□□□□ -1.02
NUP88-213ENST00000576862 ACRP10323 421 aa8.66□□□□□ -1.02
NUP88-213ENST00000576862 ATF4P18848 351 aaPredicted RBP8.66□□□□□ -1.02
NUP88-213ENST00000576862 GBP1P32455 592 aa8.66□□□□□ -1.02
NUP88-213ENST00000576862 BNIP3Q12983 259 aa8.66□□□□□ -1.02
NUP88-213ENST00000576862 VSIG10LQ86VR7 867 aa8.66□□□□□ -1.02
NUP88-213ENST00000576862 BCL7CQ8WUZ0 217 aaPredicted RBP8.66□□□□□ -1.02
NUP88-213ENST00000576862 RNF141Q8WVD5 230 aa8.66□□□□□ -1.02
NUP88-213ENST00000576862 SEC16BQ96JE7 1060 aa8.66□□□□□ -1.02
NUP88-213ENST00000576862 KREMEN1Q96MU8 473 aa8.66□□□□□ -1.02
NUP88-213ENST00000576862 SLC9A7Q96T83 725 aa8.66□□□□□ -1.02
NUP88-213ENST00000576862 ST14Q9Y5Y6 855 aa8.66□□□□□ -1.02
NUP88-213ENST00000576862 TMEM265A0A087WTH1 108 aa8.65□□□□□ -1.02
NUP88-213ENST00000576862 KIR3DL1P43629 444 aa8.65□□□□□ -1.02
NUP88-213ENST00000576862 TNK2Q07912 1038 aa8.65□□□□□ -1.02
NUP88-213ENST00000576862 FBXW10Q5XX13 1052 aa8.65□□□□□ -1.02
NUP88-213ENST00000576862 RUFY4Q6ZNE9 571 aa8.65□□□□□ -1.02
NUP88-213ENST00000576862 LSRQ86X29 649 aaPredicted RBP8.65□□□□□ -1.02
NUP88-213ENST00000576862 VAV3Q9UKW4 847 aa8.65□□□□□ -1.02
NUP88-213ENST00000576862 SNX11Q9Y5W9 270 aa8.65□□□□□ -1.02
NUP88-213ENST00000576862 LRRN2O75325 713 aa8.64□□□□□ -1.03
NUP88-213ENST00000576862 WNT11O96014 354 aa8.64□□□□□ -1.03
NUP88-213ENST00000576862 CD96P40200 585 aa8.64□□□□□ -1.03
NUP88-213ENST00000576862 PRKCQQ04759 706 aa8.64□□□□□ -1.03
NUP88-213ENST00000576862 INTS3Q68E01 1043 aaKnown RBP8.64□□□□□ -1.03
NUP88-213ENST00000576862 ZNF574Q6ZN55 896 aaPredicted RBP8.64□□□□□ -1.03
NUP88-213ENST00000576862 SPRED2Q7Z698 418 aa8.64□□□□□ -1.03
NUP88-213ENST00000576862 TAB3Q8N5C8 712 aaPredicted RBP8.64□□□□□ -1.03
NUP88-213ENST00000576862 SHDQ96IW2 340 aa8.64□□□□□ -1.03
NUP88-213ENST00000576862 SRRTQ9BXP5 876 aaKnown RBP8.64□□□□□ -1.03
NUP88-213ENST00000576862 LOC100996750A0A140TA64 210 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 FAM155AB1AL88 458 aaPredicted RBP8.63□□□□□ -1.03
NUP88-213ENST00000576862 CCNFP41002 786 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 GIPRP48546 466 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 CLCN7P51798 805 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 AOC3Q16853 763 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 TMEM192Q8IY95 271 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 MISP3Q96FF7 219 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 HRASLS5Q96KN8 279 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 FBXL18Q96ME1 805 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 HSPA12BQ96MM6 686 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 TM9SF2Q99805 663 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 KRTAP4-6Q9BYQ5 205 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 SEMA3GQ9NS98 782 aa8.63□□□□□ -1.03
NUP88-213ENST00000576862 PITPNM2Q9BZ72 1349 aa8.62□□□□□ -1.03
NUP88-213ENST00000576862 EIF6P56537 245 aaKnown RBP8.62□□□□□ -1.03
NUP88-213ENST00000576862 CDKAL1Q5VV42 579 aa8.62□□□□□ -1.03
NUP88-213ENST00000576862 STK11IPQ8N1F8 1099 aa8.62□□□□□ -1.03
NUP88-213ENST00000576862 DTWD2Q8NBA8 298 aa8.62□□□□□ -1.03
NUP88-213ENST00000576862 ASPNQ9BXN1 380 aa8.62□□□□□ -1.03
NUP88-213ENST00000576862 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms