RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 ANAPC4Q9UJX5 808 aa13.11□□□□□ -0.31
CHD3-216ENST00000573936 DOCK1Q14185 1865 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 A0A0G2JLL6 359 aaPredicted RBP13.1□□□□□ -0.31
CHD3-216ENST00000573936 POTEFA5A3E0 1075 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 C19orf81C9J6K1 198 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 USP17L10C9JJH3 530 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 SGSM2O43147 1006 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 EVX2Q03828 476 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 SPP2Q13103 211 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 RAB3GAP1Q15042 981 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 PRRT2Q7Z6L0 340 aaPredicted RBP13.1□□□□□ -0.31
CHD3-216ENST00000573936 CD99L2Q8TCZ2 262 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 BRI3BPQ8WY22 251 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 EFCC1Q9HA90 598 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 PTPN22Q9Y2R2 807 aa13.1□□□□□ -0.31
CHD3-216ENST00000573936 KIAA0100Q14667 2235 aaKnown RBP13.09□□□□□ -0.31
CHD3-216ENST00000573936 TRIM75PA6NK02 468 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 ZNF213O14771 459 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 PCP11498 1178 aaKnown RBP13.09□□□□□ -0.31
CHD3-216ENST00000573936 NT5C2P49902 561 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 USP14P54578 494 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 BACE1P56817 501 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 JAG1P78504 1218 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 SH3D19Q5HYK7 790 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 KIAA1211Q6ZU35 1233 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 ANKRD23Q86SG2 305 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 NBPF11Q86T75 865 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 STK11IPQ8N1F8 1099 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 PROCA1Q8NCQ7 364 aaPredicted RBP13.09□□□□□ -0.31
CHD3-216ENST00000573936 PTPN18Q99952 460 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 TMOD4Q9NZQ9 345 aa13.09□□□□□ -0.31
CHD3-216ENST00000573936 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.09□□□□□ -0.31
CHD3-216ENST00000573936 BAZ2AQ9UIF9 1905 aaKnown RBP13.09□□□□□ -0.31
CHD3-216ENST00000573936 BTBD19C9JJ37 291 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 SMIM22K7EJ46 135 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 CDC45O75419 566 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 AKR1B1P15121 316 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 RASA1P20936 1047 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 GUCY1A2P33402 732 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 SP3Q02447 781 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 CTDSPL2Q05D32 466 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 PABPC4Q13310 644 aaKnown RBP eCLIP13.08□□□□□ -0.32
CHD3-216ENST00000573936 SEPT2Q15019 361 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 IMMTQ16891 758 aaKnown RBP13.08□□□□□ -0.32
CHD3-216ENST00000573936 PPP4R3BQ5MIZ7 849 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 USP17L2Q6R6M4 530 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 GADL1Q6ZQY3 521 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 CCDC84Q86UT8 332 aaPredicted RBP13.08□□□□□ -0.32
CHD3-216ENST00000573936 RNF41Q9H4P4 317 aaPredicted RBP13.08□□□□□ -0.32
CHD3-216ENST00000573936 SH2D4AQ9H788 454 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 KANSL2Q9H9L4 492 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 ZFYVE28Q9HCC9 887 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 ARHGEF10LQ9HCE6 1279 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 SLC45A1Q9Y2W3 748 aa13.08□□□□□ -0.32
CHD3-216ENST00000573936 FGRP09769 529 aa13.07□□□□□ -0.32
CHD3-216ENST00000573936 TSPY3P0CV98 308 aa13.07□□□□□ -0.32
CHD3-216ENST00000573936 TSPY8P0CW00 308 aa13.07□□□□□ -0.32
CHD3-216ENST00000573936 SHROOM1Q2M3G4 852 aaPredicted RBP13.07□□□□□ -0.32
CHD3-216ENST00000573936 FEZ1Q99689 392 aa13.07□□□□□ -0.32
CHD3-216ENST00000573936 ESYT1Q9BSJ8 1104 aa13.07□□□□□ -0.32
CHD3-216ENST00000573936 KIAA1683Q9H0B3 1180 aa13.07□□□□□ -0.32
CHD3-216ENST00000573936 AGTPBP1Q9UPW5 1226 aa13.07□□□□□ -0.32
CHD3-216ENST00000573936 U3KPZ7 1027 aaPredicted RBP13.07□□□□□ -0.32
CHD3-216ENST00000573936 PDHXO00330 501 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 ORC4O43929 436 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 PRDM1O75626 825 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 EN2P19622 333 aaPredicted RBP13.06□□□□□ -0.32
CHD3-216ENST00000573936 HMGCS2P54868 508 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 CAP1Q01518 475 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 ICA1Q05084 483 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 MTMR2Q13614 643 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 MOGSQ13724 837 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 TAF1CQ15572 869 aaPredicted RBP13.06□□□□□ -0.32
CHD3-216ENST00000573936 AKNAD1Q5T1N1 836 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 GPAT2Q6NUI2 795 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 MFSD6Q6ZSS7 791 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 FAM43AQ8N2R8 423 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 NEDD1Q8NHV4 660 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 STAG1Q8WVM7 1258 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 IL25Q9H293 177 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 PNMA3Q9UL41 463 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 DDX52Q9Y2R4 599 aaKnown RBP eCLIP13.06□□□□□ -0.32
CHD3-216ENST00000573936 RBBP6Q7Z6E9 1792 aaKnown RBP13.06□□□□□ -0.32
CHD3-216ENST00000573936 ZSWIM8A7E2V4 1837 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 ATAD5Q96QE3 1844 aa13.06□□□□□ -0.32
CHD3-216ENST00000573936 TSPY2A6NKD2 308 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 OSBPP22059 807 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 HAND2P61296 217 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 TFAP4Q01664 338 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 PTH1RQ03431 593 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 SLC9C1Q4G0N8 1177 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 MAP4K1Q92918 833 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 C12orf42Q96LP6 360 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 PARK7Q99497 189 aaKnown RBP13.05□□□□□ -0.32
CHD3-216ENST00000573936 TOMM22Q9NS69 142 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 NYAP2Q9P242 653 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 TMX2Q9Y320 296 aa13.05□□□□□ -0.32
CHD3-216ENST00000573936 RANBP6O60518 1105 aaKnown RBP13.04□□□□□ -0.32
CHD3-216ENST00000573936 EEF2P13639 858 aaKnown RBP13.04□□□□□ -0.32
CHD3-216ENST00000573936 ACER1Q8TDN7 264 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms