RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-215ENST00000573028 SHISA4Q96DD7 197 aa19.43■□□□□ 0.7
VPS53-215ENST00000573028 RNF41Q9H4P4 317 aaPredicted RBP19.43■□□□□ 0.7
VPS53-215ENST00000573028 ST5P78524 1137 aa19.43■□□□□ 0.7
VPS53-215ENST00000573028 SMC1AQ14683 1233 aaKnown RBP19.43■□□□□ 0.7
VPS53-215ENST00000573028 KIF4BQ2VIQ3 1234 aa19.43■□□□□ 0.7
VPS53-215ENST00000573028 TAF3Q5VWG9 929 aa19.43■□□□□ 0.7
VPS53-215ENST00000573028 TRIML1Q8N9V2 468 aa19.43■□□□□ 0.7
VPS53-215ENST00000573028 PAGE5Q96GU1 130 aa19.43■□□□□ 0.7
VPS53-215ENST00000573028 CTNND2Q9UQB3 1225 aa19.43■□□□□ 0.7
VPS53-215ENST00000573028 A0A1B0GTH6 734 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 WTIPA6NIX2 430 aaPredicted RBP19.42■□□□□ 0.7
VPS53-215ENST00000573028 KIF5CO60282 957 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 TMTC2Q8N394 836 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 VPS16Q9H269 839 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 CDC25AP30304 524 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 KRT2P35908 639 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 SLC4A8Q2Y0W8 1093 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 FILIP1LQ4L180 1135 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 SPATA1Q5VX52 437 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 RGS22Q8NE09 1264 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 ESR2Q92731 530 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 PES1O00541 588 aaKnown RBP19.42■□□□□ 0.7
VPS53-215ENST00000573028 ZNF579Q8NAF0 562 aaKnown RBP19.42■□□□□ 0.7
VPS53-215ENST00000573028 ACRBPQ8NEB7 543 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 ADGRG1Q9Y653 693 aa19.42■□□□□ 0.7
VPS53-215ENST00000573028 GNAT2P19087 354 aa19.41■□□□□ 0.7
VPS53-215ENST00000573028 ERCC5P28715 1186 aaPredicted RBP19.41■□□□□ 0.7
VPS53-215ENST00000573028 PLEKHG2Q9H7P9 1386 aa19.41■□□□□ 0.7
VPS53-215ENST00000573028 UBR2Q8IWV8 1755 aa19.41■□□□□ 0.7
VPS53-215ENST00000573028 CYP2C19P33261 490 aa19.41■□□□□ 0.7
VPS53-215ENST00000573028 IGHMBP2P38935 993 aaKnown RBP19.41■□□□□ 0.7
VPS53-215ENST00000573028 CHMP4BP1P59074 171 aa19.41■□□□□ 0.7
VPS53-215ENST00000573028 MCM6Q14566 821 aa19.41■□□□□ 0.7
VPS53-215ENST00000573028 IFIT1BQ5T764 474 aaKnown RBP19.41■□□□□ 0.7
VPS53-215ENST00000573028 BTG4Q9NY30 223 aa19.41■□□□□ 0.7
VPS53-215ENST00000573028 N4BP3O15049 544 aa19.4■□□□□ 0.7
VPS53-215ENST00000573028 CDC5LQ99459 802 aaKnown RBP19.4■□□□□ 0.7
VPS53-215ENST00000573028 GYG1P46976 350 aa19.4■□□□□ 0.7
VPS53-215ENST00000573028 DYNLL1P63167 89 aaKnown RBP19.4■□□□□ 0.7
VPS53-215ENST00000573028 RRAGBQ5VZM2 374 aa19.4■□□□□ 0.7
VPS53-215ENST00000573028 ENAHQ8N8S7 591 aaPredicted RBP19.4■□□□□ 0.7
VPS53-215ENST00000573028 ABL1P00519 1130 aa19.4■□□□□ 0.7
VPS53-215ENST00000573028 RHOXF2BP0C7M4 288 aa19.4■□□□□ 0.7
VPS53-215ENST00000573028 FXR1P51114 621 aaKnown RBP eCLIP19.4■□□□□ 0.7
VPS53-215ENST00000573028 HNRNPH2P55795 449 aaKnown RBP19.4■□□□□ 0.7
VPS53-215ENST00000573028 RSRC2Q7L4I2 434 aaKnown RBP19.4■□□□□ 0.7
VPS53-215ENST00000573028 RABGGTAQ92696 567 aa19.4■□□□□ 0.7
VPS53-215ENST00000573028 RHOXF2Q9BQY4 288 aa19.4■□□□□ 0.7
VPS53-215ENST00000573028 MAGEB6P1A0A0J9YX57 407 aa19.39■□□□□ 0.69
VPS53-215ENST00000573028 PTGDRQ13258 359 aa19.39■□□□□ 0.69
VPS53-215ENST00000573028 CATIPQ7Z7H3 387 aa19.39■□□□□ 0.69
VPS53-215ENST00000573028 PARP4Q9UKK3 1724 aaKnown RBP19.39■□□□□ 0.69
VPS53-215ENST00000573028 DPYDQ12882 1025 aa19.39■□□□□ 0.69
VPS53-215ENST00000573028 RNF26Q9BY78 433 aaPredicted RBP19.39■□□□□ 0.69
VPS53-215ENST00000573028 AATFQ9NY61 560 aaKnown RBP eCLIP19.39■□□□□ 0.69
VPS53-215ENST00000573028 TAB2Q9NYJ8 693 aa19.39■□□□□ 0.69
VPS53-215ENST00000573028 ZKSCAN7Q9P0L1 754 aaPredicted RBP19.39■□□□□ 0.69
VPS53-215ENST00000573028 ADD3Q9UEY8 706 aaKnown RBP19.39■□□□□ 0.69
VPS53-215ENST00000573028 SOS2Q07890 1332 aaPredicted RBP19.39■□□□□ 0.69
VPS53-215ENST00000573028 MCM7P33993 719 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 PKN1Q16512 942 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 LONRF2Q1L5Z9 754 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 ELOA2Q8IYF1 753 aaPredicted RBP19.38■□□□□ 0.69
VPS53-215ENST00000573028 NUP88Q99567 741 aaPredicted RBP19.38■□□□□ 0.69
VPS53-215ENST00000573028 TXLNAP40222 546 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 APTXQ7Z2E3 356 aaKnown RBP19.38■□□□□ 0.69
VPS53-215ENST00000573028 PANX2Q96RD6 677 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 BRMS1Q9HCU9 246 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 CALCOCO1Q9P1Z2 691 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 EVX2Q03828 476 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 CHRNDQ07001 517 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 TTC38Q5R3I4 469 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 PIK3AP1Q6ZUJ8 805 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 SLC35F6Q8N357 371 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 ZSCAN10Q96SZ4 725 aaPredicted RBP19.38■□□□□ 0.69
VPS53-215ENST00000573028 MTMR7Q9Y216 660 aa19.38■□□□□ 0.69
VPS53-215ENST00000573028 MFAP3LO75121 409 aa19.37■□□□□ 0.69
VPS53-215ENST00000573028 CUL4BQ13620 913 aa19.37■□□□□ 0.69
VPS53-215ENST00000573028 SPATA20Q8TB22 786 aa19.37■□□□□ 0.69
VPS53-215ENST00000573028 RNF216Q9NWF9 866 aaPredicted RBP19.37■□□□□ 0.69
VPS53-215ENST00000573028 ECM29Q5VYK3 1845 aa19.37■□□□□ 0.69
VPS53-215ENST00000573028 NMT2O60551 498 aa19.37■□□□□ 0.69
VPS53-215ENST00000573028 WWC2Q6AWC2 1192 aa19.37■□□□□ 0.69
VPS53-215ENST00000573028 ZNF34Q8IZ26 560 aa19.37■□□□□ 0.69
VPS53-215ENST00000573028 DDX60Q8IY21 1712 aaKnown RBP19.37■□□□□ 0.69
VPS53-215ENST00000573028 PPP1R3GB7ZBB8 358 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 GYPCP04921 128 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 SEC23AQ15436 765 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 SRGAP1Q7Z6B7 1085 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 SLF1Q9BQI6 1058 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 FUT8Q9BYC5 575 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 SUGCTQ9HAC7 445 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 SLAIN2Q9P270 581 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 IQCA1Q86XH1 822 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 RASSF8Q8NHQ8 419 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 PNPLA7Q6ZV29 1317 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 NLRP5P59047 1200 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 CCDC152Q4G0S7 254 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 FAM47AQ5JRC9 791 aa19.36■□□□□ 0.69
VPS53-215ENST00000573028 JAKMIP3Q5VZ66 844 aa19.36■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms