RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 PYM1Q9BRP8 204 aaKnown RBP12.21□□□□□ -0.45
CCDC40-207ENST00000572253 LRP2BPQ9P2M1 347 aa12.21□□□□□ -0.45
CCDC40-207ENST00000572253 MFAP3LO75121 409 aa12.21□□□□□ -0.46
CCDC40-207ENST00000572253 TUBBP07437 444 aa12.21□□□□□ -0.46
CCDC40-207ENST00000572253 MTF1Q14872 753 aa12.21□□□□□ -0.46
CCDC40-207ENST00000572253 HDXQ7Z353 690 aa12.21□□□□□ -0.46
CCDC40-207ENST00000572253 SPATA20Q8TB22 786 aa12.21□□□□□ -0.46
CCDC40-207ENST00000572253 ACBD3Q9H3P7 528 aa12.21□□□□□ -0.46
CCDC40-207ENST00000572253 PUF60Q9UHX1 559 aaKnown RBP12.21□□□□□ -0.46
CCDC40-207ENST00000572253 SASH3O75995 380 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 RASGRF1Q13972 1273 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 TMTC1Q8IUR5 882 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 NEK11Q8NG66 645 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 OXER1Q8TDS5 423 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 PNPLA7Q6ZV29 1317 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 TEX33O43247 280 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 CMTR1Q8N1G2 835 aaKnown RBP12.2□□□□□ -0.46
CCDC40-207ENST00000572253 FUT8Q9BYC5 575 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 UBXN6Q9BZV1 441 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 N4BP3O15049 544 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 PIP4K2BP78356 416 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 TRIM14Q14142 442 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 PAGE5Q96GU1 130 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 ADD3Q9UEY8 706 aaKnown RBP12.2□□□□□ -0.46
CCDC40-207ENST00000572253 ASAP1Q9ULH1 1129 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 CTAGE15A4D2H0 777 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 MINDY4BA8MYZ0 360 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 PRKAB2O43741 272 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 CTAGE8P0CG41 777 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 RAD9BQ6WBX8 426 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 USP49Q70CQ1 688 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 CATIPQ7Z7H3 387 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 CTAGE6Q86UF2 777 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 CTAGE4Q8IX94 777 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 EXOC4Q96A65 974 aa12.2□□□□□ -0.46
CCDC40-207ENST00000572253 NAPGQ99747 312 aaPredicted RBP12.2□□□□□ -0.46
CCDC40-207ENST00000572253 AKAP11Q9UKA4 1901 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 FGFR2P21802 821 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 PPARAQ07869 468 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 RASGRP2Q7LDG7 609 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 LCORLQ8N3X6 602 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 SYMPKQ92797 1274 aaKnown RBP12.19□□□□□ -0.46
CCDC40-207ENST00000572253 HSP90B2PQ58FF3 399 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 RBM28Q9NW13 759 aaKnown RBP12.19□□□□□ -0.46
CCDC40-207ENST00000572253 VPS54Q9P1Q0 977 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 ITIH6Q6UXX5 1313 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 CASP14P31944 242 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 WHAMMP3Q1A5X7 153 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 CDKAL1Q5VV42 579 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 IQUBQ8NA54 791 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 HNRNPLLQ8WVV9 542 aaKnown RBP12.19□□□□□ -0.46
CCDC40-207ENST00000572253 EPSTI1Q96J88 318 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 NUP88Q99567 741 aaPredicted RBP12.19□□□□□ -0.46
CCDC40-207ENST00000572253 IRX2Q9BZI1 471 aaPredicted RBP12.19□□□□□ -0.46
CCDC40-207ENST00000572253 ZCCHC17Q9NP64 241 aaKnown RBP12.19□□□□□ -0.46
CCDC40-207ENST00000572253 MYO1AQ9UBC5 1043 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 CTNND2Q9UQB3 1225 aa12.19□□□□□ -0.46
CCDC40-207ENST00000572253 CALM1P0DP23 149 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 CALM2P0DP24 149 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 CALM3P0DP25 149 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 LMAN1P49257 510 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 CUL4BQ13620 913 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 TSR1Q2NL82 804 aaKnown RBP12.18□□□□□ -0.46
CCDC40-207ENST00000572253 RRAGBQ5VZM2 374 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 CYP26C1Q6V0L0 522 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 LEKR1Q6ZMV7 388 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 TNKSO95271 1327 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 CYP7A1P22680 504 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 MCM6Q14566 821 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 MUM1L1Q5H9M0 696 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 MIGA1Q8NAN2 632 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 PIGBQ92521 554 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 A0A0G2JS52 829 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 IGHMBP2P38935 993 aaKnown RBP12.18□□□□□ -0.46
CCDC40-207ENST00000572253 TTC38Q5R3I4 469 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 IQCA1Q86XH1 822 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 MED15Q96RN5 788 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 RMND1Q9NWS8 449 aa12.18□□□□□ -0.46
CCDC40-207ENST00000572253 ST5P78524 1137 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 DPYDQ12882 1025 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 IFIT1BQ5T764 474 aaKnown RBP12.17□□□□□ -0.46
CCDC40-207ENST00000572253 SH3RF1Q7Z6J0 888 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 DZIP3Q86Y13 1208 aaKnown RBP12.17□□□□□ -0.46
CCDC40-207ENST00000572253 PSD3Q9NYI0 1048 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 ERVV-1B6SEH8 477 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 PRPF3O43395 683 aaKnown RBP12.17□□□□□ -0.46
CCDC40-207ENST00000572253 CCT6AP40227 531 aaKnown RBP12.17□□□□□ -0.46
CCDC40-207ENST00000572253 PBX1P40424 430 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 ZNF174Q15697 407 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 ZSCAN26Q16670 478 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 SLC35F6Q8N357 371 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 PAPPAQ13219 1627 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 IRX5P78411 483 aaPredicted RBP12.17□□□□□ -0.46
CCDC40-207ENST00000572253 CCDC148Q8NFR7 591 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 V9GY48 417 aaPredicted RBP12.17□□□□□ -0.46
CCDC40-207ENST00000572253 LRP6O75581 1613 aa12.17□□□□□ -0.46
CCDC40-207ENST00000572253 COL5A2P05997 1499 aaPredicted RBP12.16□□□□□ -0.46
CCDC40-207ENST00000572253 CD44P16070 742 aaKnown RBP12.16□□□□□ -0.46
CCDC40-207ENST00000572253 PAK1Q13153 545 aa12.16□□□□□ -0.46
CCDC40-207ENST00000572253 MSANTD4Q8NCY6 345 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms