RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 CSF1RP07333 972 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 ZNF853P0CG23 659 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 CRKP46108 304 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 PPATQ06203 517 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 LRIT3Q3SXY7 679 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 PHF6Q8IWS0 365 aaKnown RBP eCLIP7.44□□□□□ -1.22
VPS53-208ENST00000570650 GOLGA6L2Q8N9W4 650 aaPredicted RBP7.44□□□□□ -1.22
VPS53-208ENST00000570650 BANK1Q8NDB2 785 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 FAM174AQ8TBP5 190 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 HPS1Q92902 700 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 GPKOWQ92917 476 aaPredicted RBP eCLIP7.44□□□□□ -1.22
VPS53-208ENST00000570650 ZKSCAN4Q969J2 545 aaPredicted RBP7.44□□□□□ -1.22
VPS53-208ENST00000570650 HOOK2Q96ED9 719 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 OCSTAMPQ9BR26 566 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 FAM205AQ6ZU69 1335 aa7.44□□□□□ -1.22
VPS53-208ENST00000570650 ADCY3O60266 1144 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 INHAP05111 366 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 BCRP11274 1271 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 GNAI1P63096 354 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 DCAF15Q66K64 600 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 PDXDC2PQ6P474 469 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 NECAB2Q7Z6G3 386 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 C7orf61Q8IZ16 206 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 TDHQ8IZJ6 230 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 TDRD7Q8NHU6 1098 aaKnown RBP7.43□□□□□ -1.22
VPS53-208ENST00000570650 PAWRQ96IZ0 340 aaKnown RBP7.43□□□□□ -1.22
VPS53-208ENST00000570650 DEFB118Q96PH6 123 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 PARK7Q99497 189 aaKnown RBP7.43□□□□□ -1.22
VPS53-208ENST00000570650 IFT57Q9NWB7 429 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 GABRQQ9UN88 632 aa7.43□□□□□ -1.22
VPS53-208ENST00000570650 ELNP15502 786 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 FLT3LGP49771 235 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 CASP7P55210 303 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 HDLBPQ00341 1268 aaKnown RBP7.42□□□□□ -1.22
VPS53-208ENST00000570650 CALD1Q05682 793 aaKnown RBP7.42□□□□□ -1.22
VPS53-208ENST00000570650 IFIT5Q13325 482 aaKnown RBP7.42□□□□□ -1.22
VPS53-208ENST00000570650 IRF5Q13568 498 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 GCKRQ14397 625 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 FAM83AQ86UY5 434 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 C8orf58Q8NAV2 365 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 ARHGAP9Q9BRR9 750 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 ZNF341Q9BYN7 854 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 MYH16Q9H6N6 1097 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 PAK6Q9NQU5 681 aaPredicted RBP7.42□□□□□ -1.22
VPS53-208ENST00000570650 AAASQ9NRG9 546 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 TMOD2Q9NZR1 351 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 ZMYND8Q9ULU4 1186 aaPredicted RBP7.42□□□□□ -1.22
VPS53-208ENST00000570650 KCNH4Q9UQ05 1017 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 ALPK3Q96L96 1907 aa7.42□□□□□ -1.22
VPS53-208ENST00000570650 A0A1B0GUL6 1792 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 PLIN1O60240 522 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 GPR37L1O60883 481 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 CYP2C8P10632 490 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 HIBADHP31937 336 aaKnown RBP7.41□□□□□ -1.22
VPS53-208ENST00000570650 INPP5BP32019 993 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 MAGEA10P43363 369 aaPredicted RBP7.41□□□□□ -1.22
VPS53-208ENST00000570650 CACNB3P54284 484 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 MOGSQ13724 837 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 ARID5BQ14865 1188 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 WDR43Q15061 677 aaKnown RBP eCLIP7.41□□□□□ -1.22
VPS53-208ENST00000570650 RALBP1Q15311 655 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 FKBP1CQ5VVH2 108 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 CRIPAKQ8N1N5 446 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 DIS3LQ8TF46 1054 aaKnown RBP7.41□□□□□ -1.22
VPS53-208ENST00000570650 TEKT1Q969V4 418 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 CDK15Q96Q40 435 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 STK31Q9BXU1 1019 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 CHMP3Q9Y3E7 222 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 WASF2Q9Y6W5 498 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 RPTORQ8N122 1335 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 RPAP1Q9BWH6 1393 aaPredicted RBP7.41□□□□□ -1.22
VPS53-208ENST00000570650 MGAMO43451 1857 aa7.41□□□□□ -1.22
VPS53-208ENST00000570650 TNPO2O14787 897 aaKnown RBP7.4□□□□□ -1.22
VPS53-208ENST00000570650 ADH1CP00326 375 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 SYN1P17600 705 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 GYG1P46976 350 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 UBE4AQ14139 1066 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 TAF7LQ5H9L4 462 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 GPAT2Q6NUI2 795 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 LDHAL6AQ6ZMR3 332 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 MIGA2Q7L4E1 593 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 TRMT44Q8IYL2 757 aaKnown RBP7.4□□□□□ -1.22
VPS53-208ENST00000570650 TSPYL6Q8N831 410 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 FAM84BQ96KN1 310 aaPredicted RBP7.4□□□□□ -1.22
VPS53-208ENST00000570650 UBE2OQ9C0C9 1292 aaKnown RBP7.4□□□□□ -1.22
VPS53-208ENST00000570650 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.4□□□□□ -1.22
VPS53-208ENST00000570650 PRDM6Q9NQX0 595 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 CNNM1Q9NRU3 951 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 DACH1Q9UI36 760 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 ZNF112Q9UJU3 913 aa7.4□□□□□ -1.22
VPS53-208ENST00000570650 CXCL11O14625 94 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 GRM5P41594 1212 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 SMCPP49901 116 aaPredicted RBP7.39□□□□□ -1.23
VPS53-208ENST00000570650 FOXO4P98177 505 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 PTK2Q05397 1052 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 NNTQ13423 1086 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 GRIK5Q16478 980 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 CCDC57Q2TAC2 916 aa7.39□□□□□ -1.23
VPS53-208ENST00000570650 NOL9Q5SY16 702 aaKnown RBP7.39□□□□□ -1.23
VPS53-208ENST00000570650 FAM109BQ6ICB4 259 aaPredicted RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms