RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 CCDC102BQ68D86 513 aa22.44■■□□□ 1.18
CLK3-227ENST00000570296 PRDM12Q9H4Q4 367 aa22.44■■□□□ 1.18
CLK3-227ENST00000570296 PRKRIP1Q9H875 184 aaPredicted RBP22.44■■□□□ 1.18
CLK3-227ENST00000570296 CIAO1O76071 339 aa22.43■■□□□ 1.18
CLK3-227ENST00000570296 DDX10Q13206 875 aaKnown RBP22.43■■□□□ 1.18
CLK3-227ENST00000570296 LRRC41Q15345 812 aa22.43■■□□□ 1.18
CLK3-227ENST00000570296 USP17L2Q6R6M4 530 aa22.43■■□□□ 1.18
CLK3-227ENST00000570296 FERMT2Q96AC1 680 aa22.43■■□□□ 1.18
CLK3-227ENST00000570296 EMILIN3Q9NT22 766 aa22.43■■□□□ 1.18
CLK3-227ENST00000570296 CXXC1Q9P0U4 656 aaPredicted RBP22.43■■□□□ 1.18
CLK3-227ENST00000570296 MYCNP04198 464 aaPredicted RBP22.42■■□□□ 1.18
CLK3-227ENST00000570296 ERICH6Q7L0X2 663 aa22.42■■□□□ 1.18
CLK3-227ENST00000570296 ZNF384Q8TF68 577 aa22.42■■□□□ 1.18
CLK3-227ENST00000570296 LRFN3Q9BTN0 628 aa22.42■■□□□ 1.18
CLK3-227ENST00000570296 TSPYL2Q9H2G4 693 aaPredicted RBP22.42■■□□□ 1.18
CLK3-227ENST00000570296 DHX36Q9H2U1 1008 aaKnown RBP22.42■■□□□ 1.18
CLK3-227ENST00000570296 LDHCP07864 332 aa22.41■■□□□ 1.18
CLK3-227ENST00000570296 GSTO1P78417 241 aa22.41■■□□□ 1.18
CLK3-227ENST00000570296 JAG1P78504 1218 aa22.41■■□□□ 1.18
CLK3-227ENST00000570296 ANO1Q5XXA6 986 aa22.41■■□□□ 1.18
CLK3-227ENST00000570296 NECAB3Q96P71 396 aaPredicted RBP22.41■■□□□ 1.18
CLK3-227ENST00000570296 PHF24Q9UPV7 400 aa22.41■■□□□ 1.18
CLK3-227ENST00000570296 CHD7Q9P2D1 2997 aa22.41■■□□□ 1.18
CLK3-227ENST00000570296 USP17L15C9J2P7 530 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 USP17L13C9JLJ4 530 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 USP17L11C9JVI0 530 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 USP17L18D6R9N7 530 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 USP17L22D6RA61 530 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 USP17L17D6RBQ6 530 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 USP17L19D6RCP7 530 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 USP17L20D6RJB6 530 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 BMP1P13497 986 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 USP17L24Q0WX57 530 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 ADGRE1Q14246 886 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 CCDC85BQ15834 202 aaPredicted RBP22.4■■□□□ 1.18
CLK3-227ENST00000570296 LBX2Q6XYB7 198 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 C12orf42Q96LP6 360 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 PBX4Q9BYU1 374 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 ZBTB21Q9ULJ3 1066 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 REV3LO60673 3130 aa22.4■■□□□ 1.18
CLK3-227ENST00000570296 WDR63Q8IWG1 891 aa22.39■■□□□ 1.17
CLK3-227ENST00000570296 TEX11Q8IYF3 940 aa22.39■■□□□ 1.17
CLK3-227ENST00000570296 ADORA1P30542 326 aa22.38■■□□□ 1.17
CLK3-227ENST00000570296 AAK1Q2M2I8 961 aa22.38■■□□□ 1.17
CLK3-227ENST00000570296 DPP9Q86TI2 863 aa22.38■■□□□ 1.17
CLK3-227ENST00000570296 METTL16Q86W50 562 aaKnown RBP22.38■■□□□ 1.17
CLK3-227ENST00000570296 USP44Q9H0E7 712 aa22.38■■□□□ 1.17
CLK3-227ENST00000570296 SIL1Q9H173 461 aa22.38■■□□□ 1.17
CLK3-227ENST00000570296 TMEM39AQ9NV64 488 aa22.38■■□□□ 1.17
CLK3-227ENST00000570296 SMCHD1A6NHR9 2005 aa22.37■■□□□ 1.17
CLK3-227ENST00000570296 PQBP1O60828 265 aaKnown RBP22.37■■□□□ 1.17
CLK3-227ENST00000570296 IGFBP4P22692 258 aa22.37■■□□□ 1.17
CLK3-227ENST00000570296 PBX2P40425 430 aa22.37■■□□□ 1.17
CLK3-227ENST00000570296 TMEM31Q5JXX7 168 aa22.37■■□□□ 1.17
CLK3-227ENST00000570296 CCDC174Q6PII3 467 aa22.37■■□□□ 1.17
CLK3-227ENST00000570296 CCDC129Q6ZRS4 1044 aa22.37■■□□□ 1.17
CLK3-227ENST00000570296 NSUN4Q96CB9 384 aaKnown RBP22.37■■□□□ 1.17
CLK3-227ENST00000570296 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.37■■□□□ 1.172e-9■□□□□ 10.4
CLK3-227ENST00000570296 DNAJC18Q9H819 358 aa22.37■■□□□ 1.17
CLK3-227ENST00000570296 STRNO43815 780 aa22.36■■□□□ 1.17
CLK3-227ENST00000570296 GDF11O95390 407 aa22.36■■□□□ 1.17
CLK3-227ENST00000570296 IL15P40933 162 aaPredicted RBP22.36■■□□□ 1.17
CLK3-227ENST00000570296 SHROOM1Q2M3G4 852 aaPredicted RBP22.36■■□□□ 1.17
CLK3-227ENST00000570296 FAM47AQ5JRC9 791 aa22.36■■□□□ 1.17
CLK3-227ENST00000570296 RASIP1Q5U651 963 aa22.36■■□□□ 1.17
CLK3-227ENST00000570296 CATSPERGQ6ZRH7 1159 aa22.36■■□□□ 1.17
CLK3-227ENST00000570296 FOXP4Q8IVH2 680 aaPredicted RBP22.36■■□□□ 1.17
CLK3-227ENST00000570296 TOX2Q96NM4 488 aa22.36■■□□□ 1.17
CLK3-227ENST00000570296 TRIM34Q9BYJ4 488 aa22.36■■□□□ 1.17
CLK3-227ENST00000570296 BTBD7Q9P203 1132 aa22.36■■□□□ 1.17
CLK3-227ENST00000570296 ADORA2AP29274 412 aa22.35■■□□□ 1.17
CLK3-227ENST00000570296 FOCADQ5VW36 1801 aa22.35■■□□□ 1.17
CLK3-227ENST00000570296 CDK5RAP2Q96SN8 1893 aa22.34■■□□□ 1.17
CLK3-227ENST00000570296 RAB30Q15771 203 aa22.34■■□□□ 1.17
CLK3-227ENST00000570296 ANKRD33Q7Z3H0 272 aa22.34■■□□□ 1.17
CLK3-227ENST00000570296 CRACR2BQ8N4Y2 399 aaPredicted RBP22.34■■□□□ 1.17
CLK3-227ENST00000570296 SLC44A5Q8NCS7 719 aa22.34■■□□□ 1.17
CLK3-227ENST00000570296 EPHX3Q9H6B9 360 aa22.34■■□□□ 1.17
CLK3-227ENST00000570296 SLC5A4Q9NY91 659 aa22.34■■□□□ 1.17
CLK3-227ENST00000570296 TRANK1O15050 2925 aa22.34■■□□□ 1.17
CLK3-227ENST00000570296 GRXCR1A8MXD5 290 aa22.33■■□□□ 1.17
CLK3-227ENST00000570296 TIMP1P01033 207 aa22.33■■□□□ 1.17
CLK3-227ENST00000570296 USP14P54578 494 aa22.33■■□□□ 1.17
CLK3-227ENST00000570296 FAAP100Q0VG06 881 aa22.33■■□□□ 1.17
CLK3-227ENST00000570296 PPIGQ13427 754 aaKnown RBP eCLIP22.33■■□□□ 1.179e-10■□□□□ 10
CLK3-227ENST00000570296 RNF180Q86T96 592 aa22.33■■□□□ 1.17
CLK3-227ENST00000570296 FEZ1Q99689 392 aa22.33■■□□□ 1.17
CLK3-227ENST00000570296 XPNPEP3Q9NQH7 507 aa22.33■■□□□ 1.17
CLK3-227ENST00000570296 MSRAQ9UJ68 235 aa22.33■■□□□ 1.17
CLK3-227ENST00000570296 A0A1W2PQ45 241 aaPredicted RBP22.32■■□□□ 1.16
CLK3-227ENST00000570296 A0A1W2PQY0 241 aa22.32■■□□□ 1.16
CLK3-227ENST00000570296 SPDYE16A6NNV3 312 aaPredicted RBP22.32■■□□□ 1.16
CLK3-227ENST00000570296 DCDC2CA8MYV0 355 aa22.32■■□□□ 1.16
CLK3-227ENST00000570296 ALYREFQ86V81 257 aaKnown RBP22.32■■□□□ 1.16
CLK3-227ENST00000570296 SH3RF3Q8TEJ3 882 aaPredicted RBP22.32■■□□□ 1.16
CLK3-227ENST00000570296 GBF1Q92538 1859 aa22.31■■□□□ 1.16
CLK3-227ENST00000570296 RARBP10826 455 aa22.31■■□□□ 1.16
CLK3-227ENST00000570296 VCAM1P19320 739 aa22.31■■□□□ 1.16
CLK3-227ENST00000570296 TMEM240Q5SV17 173 aa22.31■■□□□ 1.16
CLK3-227ENST00000570296 MFSD5Q6N075 450 aa22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms