RNA–Protein interactions for RNA: ENST00000569080.1

CDH3-209, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 291 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-209ENST00000569080 NBPF11Q86T75 865 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 CLEC10AQ8IUN9 316 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 APPBP2Q92624 585 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 GPATCH3Q96I76 525 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 STRBPQ96SI9 672 aaKnown RBP9.43□□□□□ -0.9
CDH3-209ENST00000569080 P2RX7Q99572 595 aaKnown RBP9.43□□□□□ -0.9
CDH3-209ENST00000569080 EPB41L4AQ9HCS5 686 aaPredicted RBP9.43□□□□□ -0.9
CDH3-209ENST00000569080 TMOD4Q9NZQ9 345 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 SWAP70Q9UH65 585 aa9.43□□□□□ -0.9
CDH3-209ENST00000569080 ZNF236Q9UL36 1845 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 RANBP2P49792 3224 aaKnown RBP9.42□□□□□ -0.9
CDH3-209ENST00000569080 USP17L12C9JPN9 530 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 USP17L21D6R901 530 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 M0R2C6 588 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 CNMDO75829 334 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 AKR1B1P15121 316 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 MX1P20591 662 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 IRX3P78415 501 aaPredicted RBP9.42□□□□□ -0.9
CDH3-209ENST00000569080 RAB3GAP1Q15042 981 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 ZYXQ15942 572 aaKnown RBP9.42□□□□□ -0.9
CDH3-209ENST00000569080 KIAA1755Q5JYT7 1200 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 ZSCAN25Q6NSZ9 544 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 CTR9Q6PD62 1173 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 C16orf86Q6ZW13 317 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 SIAH1Q8IUQ4 282 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 SLAIN1Q8ND83 568 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 RAET1EQ8TD07 263 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 FEZ1Q99689 392 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 RBPJLQ9UBG7 517 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 GJD2Q9UKL4 321 aa9.42□□□□□ -0.9
CDH3-209ENST00000569080 GSG1L2A8MUP6 293 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 FOXP2O15409 715 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 RNF113AO15541 343 aaKnown RBP9.41□□□□□ -0.9
CDH3-209ENST00000569080 GPAA1O43292 621 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 GLRX3O76003 335 aaKnown RBP9.41□□□□□ -0.9
CDH3-209ENST00000569080 MYCP01106 439 aaPredicted RBP9.41□□□□□ -0.9
CDH3-209ENST00000569080 ZFYP08048 801 aaPredicted RBP9.41□□□□□ -0.9
CDH3-209ENST00000569080 ELNP15502 786 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 CDK8P49336 464 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 USP14P54578 494 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 ERVK-9P63128 1117 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 ERVK-24P63145 666 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 LBX2Q6XYB7 198 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 TMEM179Q6ZVK1 233 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 UBE2Q1Q7Z7E8 422 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 PXYLP1Q8TE99 480 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.41□□□□□ -0.9
CDH3-209ENST00000569080 PORCNQ9H237 461 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 ARPP21Q9UBL0 812 aaPredicted RBP9.41□□□□□ -0.9
CDH3-209ENST00000569080 SLC4A4Q9Y6R1 1079 aa9.41□□□□□ -0.9
CDH3-209ENST00000569080 SPDYE16A6NNV3 312 aaPredicted RBP9.4□□□□□ -0.9
CDH3-209ENST00000569080 USP17L15C9J2P7 530 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 USP17L13C9JLJ4 530 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 USP17L11C9JVI0 530 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 USP17L18D6R9N7 530 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 USP17L22D6RA61 530 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 USP17L17D6RBQ6 530 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 USP17L19D6RCP7 530 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 USP17L20D6RJB6 530 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 ERC2O15083 957 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 ADCY3O60266 1144 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 INHAP05111 366 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 CCL5P13501 91 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 ICA1Q05084 483 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 USP17L24Q0WX57 530 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 Q3C1V9 767 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 SBK1Q52WX2 424 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 PRPF38BQ5VTL8 546 aaKnown RBP9.4□□□□□ -0.9
CDH3-209ENST00000569080 GIMAP6Q6P9H5 292 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 CATSPERGQ6ZRH7 1159 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 SMC5Q8IY18 1101 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 GPRC5AQ8NFJ5 357 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 GTF3C2Q8WUA4 911 aaPredicted RBP9.4□□□□□ -0.9
CDH3-209ENST00000569080 USP6NLQ92738 828 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 GCC1Q96CN9 775 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 SEC62Q99442 399 aaKnown RBP9.4□□□□□ -0.9
CDH3-209ENST00000569080 TMEM106CQ9BVX2 250 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 UNC93B1Q9H1C4 597 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 CABP5Q9NP86 173 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 STAP2Q9UGK3 403 aa9.4□□□□□ -0.9
CDH3-209ENST00000569080 COL11A1P12107 1806 aaPredicted RBP9.4□□□□□ -0.91
CDH3-209ENST00000569080 FRMPD3Q5JV73 1810 aa9.4□□□□□ -0.91
CDH3-209ENST00000569080 PLIN4Q96Q06 1357 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 DNAH12Q6ZR08 3092 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 MPHOSPH10O00566 681 aaKnown RBP9.39□□□□□ -0.91
CDH3-209ENST00000569080 GJB1P08034 283 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 RASA1P20936 1047 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 GJA8P48165 433 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 AAMPQ13685 434 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 ZMYM1Q5SVZ6 1142 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 TRIB2Q92519 343 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 COA7Q96BR5 231 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 CCDC17Q96LX7 622 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 RPAP3Q9H6T3 665 aaPredicted RBP9.39□□□□□ -0.91
CDH3-209ENST00000569080 PAK6Q9NQU5 681 aaPredicted RBP9.39□□□□□ -0.91
CDH3-209ENST00000569080 BTBD7Q9P203 1132 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 TMX2Q9Y320 296 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 RABGAP1Q9Y3P9 1069 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 ALPK3Q96L96 1907 aa9.39□□□□□ -0.91
CDH3-209ENST00000569080 MYH4Q9Y623 1939 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms