RNA–Protein interactions for RNA: ENST00000568561.5

NME3-211, Transcript of NME/NM23 nucleoside diphosphate kinase 3, humanhuman

TSL 1 (best)

Gene NME3, Length 813 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NME3-211ENST00000568561 CCND3P30281 292 aaPredicted RBP18.89■□□□□ 0.61
NME3-211ENST00000568561 PLCD1P51178 756 aa18.89■□□□□ 0.61
NME3-211ENST00000568561 MAP3K12Q12852 859 aa18.89■□□□□ 0.61
NME3-211ENST00000568561 ABCB5Q2M3G0 1257 aa18.89■□□□□ 0.61
NME3-211ENST00000568561 PLEKHH3Q7Z736 793 aa18.89■□□□□ 0.61
NME3-211ENST00000568561 RIOK1Q9BRS2 568 aaKnown RBP18.89■□□□□ 0.61
NME3-211ENST00000568561 EHD4Q9H223 541 aa18.89■□□□□ 0.61
NME3-211ENST00000568561 CWC22Q9HCG8 908 aaKnown RBP18.89■□□□□ 0.61
NME3-211ENST00000568561 OGDHLQ9ULD0 1010 aa18.89■□□□□ 0.61
NME3-211ENST00000568561 PFASO15067 1338 aa18.89■□□□□ 0.61
NME3-211ENST00000568561 VCAM1P19320 739 aa18.88■□□□□ 0.61
NME3-211ENST00000568561 SHMT1P34896 483 aa18.88■□□□□ 0.61
NME3-211ENST00000568561 RGS2P41220 211 aa18.88■□□□□ 0.61
NME3-211ENST00000568561 CERKLQ49MI3 558 aaPredicted RBP18.88■□□□□ 0.61
NME3-211ENST00000568561 MORN1Q5T089 497 aa18.88■□□□□ 0.61
NME3-211ENST00000568561 WDR78Q5VTH9 848 aa18.88■□□□□ 0.61
NME3-211ENST00000568561 GTF3C2Q8WUA4 911 aaPredicted RBP18.88■□□□□ 0.61
NME3-211ENST00000568561 C12orf42Q96LP6 360 aa18.88■□□□□ 0.61
NME3-211ENST00000568561 APBA2Q99767 749 aa18.88■□□□□ 0.61
NME3-211ENST00000568561 A0A1W2PPC1 479 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 USP17L15C9J2P7 530 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 USP17L13C9JLJ4 530 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 USP17L11C9JVI0 530 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 USP17L18D6R9N7 530 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 USP17L22D6RA61 530 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 USP17L17D6RBQ6 530 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 USP17L19D6RCP7 530 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 USP17L20D6RJB6 530 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 USP17L24Q0WX57 530 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 TTC6Q86TZ1 520 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 ERC1Q8IUD2 1116 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 MIER1Q8N108 512 aa18.87■□□□□ 0.61
NME3-211ENST00000568561 BAZ2AQ9UIF9 1905 aaKnown RBP18.87■□□□□ 0.61
NME3-211ENST00000568561 MAGEB6P1A0A0J9YX57 407 aa18.86■□□□□ 0.61
NME3-211ENST00000568561 PDE6AP16499 860 aa18.86■□□□□ 0.61
NME3-211ENST00000568561 CERS3Q8IU89 383 aa18.86■□□□□ 0.61
NME3-211ENST00000568561 RHPN1Q8TCX5 695 aa18.86■□□□□ 0.61
NME3-211ENST00000568561 GDF15Q99988 308 aa18.86■□□□□ 0.61
NME3-211ENST00000568561 RABGAP1Q9Y3P9 1069 aa18.86■□□□□ 0.61
NME3-211ENST00000568561 RLFQ13129 1914 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 POLR3DP05423 398 aaPredicted RBP18.85■□□□□ 0.61
NME3-211ENST00000568561 GUCY1A2P33402 732 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 USP14P54578 494 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 MAP2K5Q13163 448 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 SEPT2Q15019 361 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 SLC9C2Q5TAH2 1124 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 LHX8Q68G74 356 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 CATSPERGQ6ZRH7 1159 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 TRMT44Q8IYL2 757 aaKnown RBP18.85■□□□□ 0.61
NME3-211ENST00000568561 DNAJC2Q99543 621 aaKnown RBP18.85■□□□□ 0.61
NME3-211ENST00000568561 KIAA1683Q9H0B3 1180 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 RPAP3Q9H6T3 665 aaPredicted RBP18.85■□□□□ 0.61
NME3-211ENST00000568561 FLRT1Q9NZU1 646 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 BTBD7Q9P203 1132 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 A0A0G2JMZ2 1700 aa18.85■□□□□ 0.61
NME3-211ENST00000568561 ZNF532Q9HCE3 1301 aa18.84■□□□□ 0.61
NME3-211ENST00000568561 SPDYE16A6NNV3 312 aaPredicted RBP18.84■□□□□ 0.61
NME3-211ENST00000568561 GOLIM4O00461 696 aa18.84■□□□□ 0.61
NME3-211ENST00000568561 CYP2D6P10635 497 aa18.84■□□□□ 0.61
NME3-211ENST00000568561 MAGEA10P43363 369 aaPredicted RBP18.84■□□□□ 0.61
NME3-211ENST00000568561 SDR42E1Q8WUS8 393 aa18.84■□□□□ 0.61
NME3-211ENST00000568561 EDC3Q96F86 508 aaKnown RBP18.84■□□□□ 0.61
NME3-211ENST00000568561 CABP5Q9NP86 173 aa18.84■□□□□ 0.61
NME3-211ENST00000568561 MCM9Q9NXL9 1143 aa18.84■□□□□ 0.61
NME3-211ENST00000568561 MYH7P12883 1935 aa18.83■□□□□ 0.6
NME3-211ENST00000568561 MPHOSPH10O00566 681 aaKnown RBP18.83■□□□□ 0.6
NME3-211ENST00000568561 COL6A1P12109 1028 aa18.83■□□□□ 0.6
NME3-211ENST00000568561 CCNA1P78396 465 aa18.83■□□□□ 0.6
NME3-211ENST00000568561 SLFNL1Q499Z3 407 aa18.83■□□□□ 0.6
NME3-211ENST00000568561 LCORLQ8N3X6 602 aa18.83■□□□□ 0.6
NME3-211ENST00000568561 SLC44A5Q8NCS7 719 aa18.83■□□□□ 0.6
NME3-211ENST00000568561 CRNKL1Q9BZJ0 848 aaKnown RBP18.83■□□□□ 0.6
NME3-211ENST00000568561 COL6A3P12111 3177 aa18.83■□□□□ 0.6
NME3-211ENST00000568561 PARP14Q460N5 1801 aa18.82■□□□□ 0.6
NME3-211ENST00000568561 A0A1W2PRG0 241 aa18.82■□□□□ 0.6
NME3-211ENST00000568561 GABPAQ06546 454 aa18.82■□□□□ 0.6
NME3-211ENST00000568561 LRRC26Q2I0M4 334 aa18.82■□□□□ 0.6
NME3-211ENST00000568561 CLEC10AQ8IUN9 316 aa18.82■□□□□ 0.6
NME3-211ENST00000568561 ZNF236Q9UL36 1845 aa18.81■□□□□ 0.6
NME3-211ENST00000568561 TCRBV5S4A2TA0A5A2 114 aa18.81■□□□□ 0.6
NME3-211ENST00000568561 SLC15A5A6NIM6 579 aa18.81■□□□□ 0.6
NME3-211ENST00000568561 GLRX3O76003 335 aaKnown RBP18.81■□□□□ 0.6
NME3-211ENST00000568561 PTPREP23469 700 aa18.81■□□□□ 0.6
NME3-211ENST00000568561 BMP8BP34820 402 aa18.81■□□□□ 0.6
NME3-211ENST00000568561 TTF1Q15361 905 aaPredicted RBP18.81■□□□□ 0.6
NME3-211ENST00000568561 NPLOC4Q8TAT6 608 aa18.81■□□□□ 0.6
NME3-211ENST00000568561 TANGO6Q9C0B7 1094 aa18.81■□□□□ 0.6
NME3-211ENST00000568561 ARMT1Q9H993 441 aa18.81■□□□□ 0.6
NME3-211ENST00000568561 IVNS1ABPQ9Y6Y0 642 aa18.81■□□□□ 0.6
NME3-211ENST00000568561 DNAH12Q6ZR08 3092 aa18.81■□□□□ 0.6
NME3-211ENST00000568561 COL11A1P12107 1806 aaPredicted RBP18.8■□□□□ 0.6
NME3-211ENST00000568561 IFIT2P09913 472 aaKnown RBP18.8■□□□□ 0.6
NME3-211ENST00000568561 CYP2C19P33261 490 aa18.8■□□□□ 0.6
NME3-211ENST00000568561 GRB14Q14449 540 aa18.8■□□□□ 0.6
NME3-211ENST00000568561 HSP90AB4PQ58FF6 505 aa18.8■□□□□ 0.6
NME3-211ENST00000568561 KIAA1755Q5JYT7 1200 aa18.8■□□□□ 0.6
NME3-211ENST00000568561 MFSD14CQ5VZR4 134 aa18.8■□□□□ 0.6
NME3-211ENST00000568561 TMED8Q6PL24 325 aaPredicted RBP18.8■□□□□ 0.6
NME3-211ENST00000568561 LBX2Q6XYB7 198 aa18.8■□□□□ 0.6
NME3-211ENST00000568561 SIRT2Q8IXJ6 389 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms