RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 USP17L24Q0WX57 530 aa20.43■□□□□ 0.86
CLN3-231ENST00000568422 RAB3GAP1Q15042 981 aa20.43■□□□□ 0.86
CLN3-231ENST00000568422 NECAB2Q7Z6G3 386 aa20.43■□□□□ 0.86
CLN3-231ENST00000568422 EVI5O60447 810 aa20.42■□□□□ 0.86
CLN3-231ENST00000568422 POLR3DP05423 398 aaPredicted RBP20.42■□□□□ 0.86
CLN3-231ENST00000568422 CYP2B6P20813 491 aa20.42■□□□□ 0.86
CLN3-231ENST00000568422 PLCD1P51178 756 aa20.42■□□□□ 0.86
CLN3-231ENST00000568422 TRIB2Q92519 343 aa20.42■□□□□ 0.86
CLN3-231ENST00000568422 RABGAP1Q9Y3P9 1069 aa20.42■□□□□ 0.86
CLN3-231ENST00000568422 MYH8P13535 1937 aa20.41■□□□□ 0.86
CLN3-231ENST00000568422 SHMT1P34896 483 aa20.41■□□□□ 0.86
CLN3-231ENST00000568422 CCNA1P78396 465 aa20.41■□□□□ 0.86
CLN3-231ENST00000568422 Q3C1V9 767 aa20.41■□□□□ 0.86
CLN3-231ENST00000568422 MAP3K21Q5TCX8 1036 aa20.41■□□□□ 0.86
CLN3-231ENST00000568422 PAWRQ96IZ0 340 aaKnown RBP20.41■□□□□ 0.86
CLN3-231ENST00000568422 COG6Q9Y2V7 657 aa20.41■□□□□ 0.86
CLN3-231ENST00000568422 TRIOBPQ9H2D6 2365 aa20.41■□□□□ 0.86
CLN3-231ENST00000568422 APBB1O00213 710 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 GOLIM4O00461 696 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 GLRX3O76003 335 aaKnown RBP20.4■□□□□ 0.86
CLN3-231ENST00000568422 RGS2P41220 211 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 GABPAQ06546 454 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 CATSPERGQ6ZRH7 1159 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 GPR142Q7Z601 462 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 PLEKHH3Q7Z736 793 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 SIRT2Q8IXJ6 389 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 USP6NLQ92738 828 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 DNAJC2Q99543 621 aaKnown RBP20.4■□□□□ 0.86
CLN3-231ENST00000568422 PAGR1Q9BTK6 254 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 ZNF532Q9HCE3 1301 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 MCM9Q9NXL9 1143 aa20.4■□□□□ 0.86
CLN3-231ENST00000568422 RBM27Q9P2N5 1060 aaKnown RBP20.4■□□□□ 0.86
CLN3-231ENST00000568422 ALPK3Q96L96 1907 aa20.39■□□□□ 0.86
CLN3-231ENST00000568422 RANBP2P49792 3224 aaKnown RBP20.39■□□□□ 0.85
CLN3-231ENST00000568422 TCRBV5S4A2TA0A5A2 114 aa20.39■□□□□ 0.85
CLN3-231ENST00000568422 TRIM32Q13049 653 aa20.39■□□□□ 0.85
CLN3-231ENST00000568422 ZYXQ15942 572 aaKnown RBP20.39■□□□□ 0.85
CLN3-231ENST00000568422 LBX2Q6XYB7 198 aa20.39■□□□□ 0.85
CLN3-231ENST00000568422 PORCNQ9H237 461 aa20.39■□□□□ 0.85
CLN3-231ENST00000568422 MYH7P12883 1935 aa20.39■□□□□ 0.85
CLN3-231ENST00000568422 PEX10O60683 326 aa20.38■□□□□ 0.85
CLN3-231ENST00000568422 PRKAR2AP13861 404 aaKnown RBP20.38■□□□□ 0.85
CLN3-231ENST00000568422 ZKSCAN1P17029 563 aaPredicted RBP20.38■□□□□ 0.85
CLN3-231ENST00000568422 VCAM1P19320 739 aa20.38■□□□□ 0.85
CLN3-231ENST00000568422 MORN1Q5T089 497 aa20.38■□□□□ 0.85
CLN3-231ENST00000568422 POTEEQ6S8J3 1075 aa20.38■□□□□ 0.85
CLN3-231ENST00000568422 APBA2Q99767 749 aa20.38■□□□□ 0.85
CLN3-231ENST00000568422 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.38■□□□□ 0.852e-6■■■■■ 40.7
CLN3-231ENST00000568422 NBPF3Q9H094 633 aa20.38■□□□□ 0.85
CLN3-231ENST00000568422 PRO3102Q9H379 93 aa20.38■□□□□ 0.85
CLN3-231ENST00000568422 CWC22Q9HCG8 908 aaKnown RBP20.38■□□□□ 0.85
CLN3-231ENST00000568422 OGDHLQ9ULD0 1010 aa20.38■□□□□ 0.85
CLN3-231ENST00000568422 A0A1W2PPC1 479 aa20.37■□□□□ 0.85
CLN3-231ENST00000568422 ATP5JP18859 108 aa20.37■□□□□ 0.85
CLN3-231ENST00000568422 ACER1Q8TDN7 264 aa20.37■□□□□ 0.85
CLN3-231ENST00000568422 DCP1AQ9NPI6 582 aaPredicted RBP20.37■□□□□ 0.85
CLN3-231ENST00000568422 PAG1Q9NWQ8 432 aa20.37■□□□□ 0.85
CLN3-231ENST00000568422 RCAN3Q9UKA8 241 aa20.37■□□□□ 0.85
CLN3-231ENST00000568422 GUCY1A2P33402 732 aa20.36■□□□□ 0.85
CLN3-231ENST00000568422 MAP2K5Q13163 448 aa20.36■□□□□ 0.85
CLN3-231ENST00000568422 DIS3LQ8TF46 1054 aaKnown RBP20.36■□□□□ 0.85
CLN3-231ENST00000568422 ATP8A2Q9NTI2 1148 aa20.36■□□□□ 0.85
CLN3-231ENST00000568422 SWAP70Q9UH65 585 aa20.36■□□□□ 0.85
CLN3-231ENST00000568422 CNMDO75829 334 aa20.35■□□□□ 0.85
CLN3-231ENST00000568422 CACNB2Q08289 660 aaPredicted RBP20.35■□□□□ 0.85
CLN3-231ENST00000568422 SEPT2Q15019 361 aa20.35■□□□□ 0.85
CLN3-231ENST00000568422 TMEM179Q6ZVK1 233 aa20.35■□□□□ 0.85
CLN3-231ENST00000568422 LCORLQ8N3X6 602 aa20.35■□□□□ 0.85
CLN3-231ENST00000568422 SDR42E1Q8WUS8 393 aa20.35■□□□□ 0.85
CLN3-231ENST00000568422 EDC3Q96F86 508 aaKnown RBP20.35■□□□□ 0.85
CLN3-231ENST00000568422 HAUS7Q99871 368 aa20.35■□□□□ 0.85
CLN3-231ENST00000568422 RPAP3Q9H6T3 665 aaPredicted RBP20.35■□□□□ 0.85
CLN3-231ENST00000568422 HOXC10Q9NYD6 342 aa20.35■□□□□ 0.85
CLN3-231ENST00000568422 BAZ2AQ9UIF9 1905 aaKnown RBP20.35■□□□□ 0.85
CLN3-231ENST00000568422 SLC15A5A6NIM6 579 aa20.34■□□□□ 0.85
CLN3-231ENST00000568422 MPHOSPH10O00566 681 aaKnown RBP20.34■□□□□ 0.85
CLN3-231ENST00000568422 ADD2P35612 726 aa20.34■□□□□ 0.85
CLN3-231ENST00000568422 BOLA2Q9H3K6 86 aa20.34■□□□□ 0.85
CLN3-231ENST00000568422 C11orf49Q9H6J7 331 aa20.34■□□□□ 0.85
CLN3-231ENST00000568422 IVNS1ABPQ9Y6Y0 642 aa20.34■□□□□ 0.85
CLN3-231ENST00000568422 SPDYE16A6NNV3 312 aaPredicted RBP20.33■□□□□ 0.85
CLN3-231ENST00000568422 MNX1P50219 401 aaPredicted RBP20.33■□□□□ 0.85
CLN3-231ENST00000568422 COG2Q14746 738 aa20.33■□□□□ 0.85
CLN3-231ENST00000568422 AMOTL1Q8IY63 956 aa20.33■□□□□ 0.85
CLN3-231ENST00000568422 DDRGK1Q96HY6 314 aa20.33■□□□□ 0.85
CLN3-231ENST00000568422 BCL11AQ9H165 835 aa20.33■□□□□ 0.85
CLN3-231ENST00000568422 ARMT1Q9H993 441 aa20.33■□□□□ 0.85
CLN3-231ENST00000568422 SZT2Q5T011 3432 aa20.33■□□□□ 0.84
CLN3-231ENST00000568422 HOXC6P09630 235 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 PTPREP23469 700 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 UBE3CQ15386 1083 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 CCL14Q16627 93 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 MFSD14CQ5VZR4 134 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 LPAR1Q92633 364 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 CCDC17Q96LX7 622 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 LRRCC1Q9C099 1032 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 SH2D4AQ9H788 454 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 BTBD7Q9P203 1132 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 FRMPD3Q5JV73 1810 aa20.32■□□□□ 0.84
CLN3-231ENST00000568422 RLFQ13129 1914 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms