RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 CHD9Q3L8U1 2897 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 SLC15A5A6NIM6 579 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 KBTBD13C9JR72 458 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 CIAO1O76071 339 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 CYBAP13498 195 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 TLE2Q04725 743 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 SNX17Q15036 470 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 TBC1D9Q6ZT07 1266 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 ATXN2LQ8WWM7 1075 aaKnown RBP14.59□□□□□ -0.07
CLK3-222ENST00000568232 DNAJC18Q9H819 358 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 PI4KBQ9UBF8 816 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 PA2G4Q9UQ80 394 aaKnown RBP14.59□□□□□ -0.07
CLK3-222ENST00000568232 RABGAP1Q9Y3P9 1069 aa14.59□□□□□ -0.07
CLK3-222ENST00000568232 GLRX3O76003 335 aaKnown RBP14.58□□□□□ -0.08
CLK3-222ENST00000568232 IGHA2P01877 340 aa14.58□□□□□ -0.08
CLK3-222ENST00000568232 HOXC6P09630 235 aa14.58□□□□□ -0.08
CLK3-222ENST00000568232 PI16Q6UXB8 463 aa14.58□□□□□ -0.08
CLK3-222ENST00000568232 TEX11Q8IYF3 940 aa14.58□□□□□ -0.08
CLK3-222ENST00000568232 SH3RF3Q8TEJ3 882 aaPredicted RBP14.58□□□□□ -0.08
CLK3-222ENST00000568232 NSUN4Q96CB9 384 aaKnown RBP14.58□□□□□ -0.08
CLK3-222ENST00000568232 UHRF1Q96T88 793 aaPredicted RBP14.58□□□□□ -0.08
CLK3-222ENST00000568232 RLFQ13129 1914 aa14.58□□□□□ -0.08
CLK3-222ENST00000568232 BDP1A6H8Y1 2624 aa14.58□□□□□ -0.08
CLK3-222ENST00000568232 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.57□□□□□ -0.08
CLK3-222ENST00000568232 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.57□□□□□ -0.08
CLK3-222ENST00000568232 CCNA1P78396 465 aa14.57□□□□□ -0.08
CLK3-222ENST00000568232 GRB14Q14449 540 aa14.57□□□□□ -0.08
CLK3-222ENST00000568232 CCDC85BQ15834 202 aaPredicted RBP14.57□□□□□ -0.08
CLK3-222ENST00000568232 ZYXQ15942 572 aaKnown RBP14.57□□□□□ -0.08
CLK3-222ENST00000568232 MRPL50Q8N5N7 158 aaKnown RBP14.57□□□□□ -0.08
CLK3-222ENST00000568232 GTF3C2Q8WUA4 911 aaPredicted RBP14.57□□□□□ -0.08
CLK3-222ENST00000568232 BTBD7Q9P203 1132 aa14.57□□□□□ -0.08
CLK3-222ENST00000568232 THEGQ9P2T0 379 aa14.57□□□□□ -0.08
CLK3-222ENST00000568232 REV3LO60673 3130 aa14.57□□□□□ -0.08
CLK3-222ENST00000568232 PDS5AQ29RF7 1337 aaKnown RBP14.57□□□□□ -0.08
CLK3-222ENST00000568232 LDHCP07864 332 aa14.56□□□□□ -0.08
CLK3-222ENST00000568232 IL15P40933 162 aaPredicted RBP14.56□□□□□ -0.08
CLK3-222ENST00000568232 PRAMEF19Q5SWL8 479 aa14.56□□□□□ -0.08
CLK3-222ENST00000568232 USP17L2Q6R6M4 530 aa14.56□□□□□ -0.08
CLK3-222ENST00000568232 TIFAQ96CG3 184 aa14.56□□□□□ -0.08
CLK3-222ENST00000568232 NECAB3Q96P71 396 aaPredicted RBP14.56□□□□□ -0.08
CLK3-222ENST00000568232 PRDM12Q9H4Q4 367 aa14.56□□□□□ -0.08
CLK3-222ENST00000568232 FBXO3Q9UK99 471 aa14.56□□□□□ -0.08
CLK3-222ENST00000568232 ZBTB21Q9ULJ3 1066 aa14.56□□□□□ -0.08
CLK3-222ENST00000568232 TACC3Q9Y6A5 838 aa14.56□□□□□ -0.08
CLK3-222ENST00000568232 IVNS1ABPQ9Y6Y0 642 aa14.56□□□□□ -0.08
CLK3-222ENST00000568232 MAP4K4O95819 1239 aaPredicted RBP14.55□□□□□ -0.08
CLK3-222ENST00000568232 GSTO1P78417 241 aa14.55□□□□□ -0.08
CLK3-222ENST00000568232 MRPS5P82675 430 aaKnown RBP14.55□□□□□ -0.08
CLK3-222ENST00000568232 LRRC41Q15345 812 aa14.55□□□□□ -0.08
CLK3-222ENST00000568232 XAGE2Q96GT9 111 aa14.55□□□□□ -0.08
CLK3-222ENST00000568232 RAI14Q9P0K7 980 aa14.55□□□□□ -0.08
CLK3-222ENST00000568232 HMG20BQ9P0W2 317 aa14.55□□□□□ -0.08
CLK3-222ENST00000568232 SIPA1L1O43166 1804 aa14.55□□□□□ -0.08
CLK3-222ENST00000568232 A0A1B0GUL7 405 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 GRXCR1A8MXD5 290 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 USP17L15C9J2P7 530 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 USP17L13C9JLJ4 530 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 USP17L11C9JVI0 530 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 USP17L18D6R9N7 530 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 USP17L22D6RA61 530 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 USP17L17D6RBQ6 530 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 USP17L19D6RCP7 530 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 USP17L20D6RJB6 530 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 SEPT4O43236 478 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 CLTBP09497 229 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 RAG1P15918 1043 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 PBX2P40425 430 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 USP17L24Q0WX57 530 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 FAM47AQ5JRC9 791 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 C1orf53Q5VUE5 145 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 CATSPERGQ6ZRH7 1159 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 DPP9Q86TI2 863 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 METTL16Q86W50 562 aaKnown RBP14.54□□□□□ -0.08
CLK3-222ENST00000568232 MAPKAPK5Q8IW41 473 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 CRACR2BQ8N4Y2 399 aaPredicted RBP14.54□□□□□ -0.08
CLK3-222ENST00000568232 TGFBRAP1Q8WUH2 860 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 GAS2L1Q99501 681 aaPredicted RBP14.54□□□□□ -0.08
CLK3-222ENST00000568232 DHX36Q9H2U1 1008 aaKnown RBP14.54□□□□□ -0.08
CLK3-222ENST00000568232 PALD1Q9ULE6 856 aa14.54□□□□□ -0.08
CLK3-222ENST00000568232 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP14.54□□□□□ -0.08
CLK3-222ENST00000568232 ADORA2AP29274 412 aa14.53□□□□□ -0.08
CLK3-222ENST00000568232 FPGSQ05932 587 aa14.53□□□□□ -0.08
CLK3-222ENST00000568232 ADGRE1Q14246 886 aa14.53□□□□□ -0.08
CLK3-222ENST00000568232 AKNAD1Q5T1N1 836 aa14.53□□□□□ -0.08
CLK3-222ENST00000568232 FOXP4Q8IVH2 680 aaPredicted RBP14.53□□□□□ -0.08
CLK3-222ENST00000568232 TRIM34Q9BYJ4 488 aa14.53□□□□□ -0.08
CLK3-222ENST00000568232 AATFQ9NY61 560 aaKnown RBP eCLIP14.53□□□□□ -0.08
CLK3-222ENST00000568232 PTPRCP08575 1304 aa14.52□□□□□ -0.08
CLK3-222ENST00000568232 KIAA0355O15063 1070 aa14.52□□□□□ -0.09
CLK3-222ENST00000568232 PQBP1O60828 265 aaKnown RBP14.52□□□□□ -0.09
CLK3-222ENST00000568232 COBLO75128 1261 aa14.52□□□□□ -0.09
CLK3-222ENST00000568232 GH2P01242 217 aa14.52□□□□□ -0.09
CLK3-222ENST00000568232 OLFML2BQ68BL8 750 aa14.52□□□□□ -0.09
CLK3-222ENST00000568232 SPATA5Q8NB90 893 aa14.52□□□□□ -0.09
CLK3-222ENST00000568232 C12orf42Q96LP6 360 aa14.52□□□□□ -0.09
CLK3-222ENST00000568232 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.52□□□□□ -0.09
CLK3-222ENST00000568232 PBX4Q9BYU1 374 aa14.52□□□□□ -0.09
CLK3-222ENST00000568232 TMEM39AQ9NV64 488 aa14.52□□□□□ -0.09
CLK3-222ENST00000568232 SAP30BPQ9UHR5 308 aaKnown RBP14.52□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms