RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 RAB3GAP1Q15042 981 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 ERICH6BQ5W0A0 696 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 GADL1Q6ZQY3 521 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 TMEM179Q6ZVK1 233 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 FASTKD5Q7L8L6 764 aaKnown RBP11.7□□□□□ -0.54
CLK3-220ENST00000567992 SIAH1Q8IUQ4 282 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 AGTPBP1Q9UPW5 1226 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.7□□□□□ -0.54
CLK3-220ENST00000567992 SLC45A1Q9Y2W3 748 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 RLFQ13129 1914 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 PLIN4Q96Q06 1357 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 RAD50Q92878 1312 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 MYH4Q9Y623 1939 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 USP17L10C9JJH3 530 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 TLR2O60603 784 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 FGAP02671 866 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 CYP2C8P10632 490 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 CHMLP26374 656 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 STK11IPQ8N1F8 1099 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 C12orf42Q96LP6 360 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 CCDC17Q96LX7 622 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 NBPF3Q9H094 633 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 ZFYVE28Q9HCC9 887 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 CABP5Q9NP86 173 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 EMILIN3Q9NT22 766 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 ANAPC4Q9UJX5 808 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 A0A0G2JMZ2 1700 aa11.69□□□□□ -0.54
CLK3-220ENST00000567992 MGAMO43451 1857 aa11.68□□□□□ -0.54
CLK3-220ENST00000567992 IGKV6D-41A0A0C4DH26 115 aa11.68□□□□□ -0.54
CLK3-220ENST00000567992 C19orf81C9J6K1 198 aa11.68□□□□□ -0.54
CLK3-220ENST00000567992 MPHOSPH10O00566 681 aaKnown RBP11.68□□□□□ -0.54
CLK3-220ENST00000567992 FKTNO75072 461 aa11.68□□□□□ -0.54
CLK3-220ENST00000567992 PRDM1O75626 825 aa11.68□□□□□ -0.54
CLK3-220ENST00000567992 FGRP09769 529 aa11.68□□□□□ -0.54
CLK3-220ENST00000567992 CTDSPL2Q05D32 466 aa11.68□□□□□ -0.54
CLK3-220ENST00000567992 C17orf99Q6UX52 265 aa11.68□□□□□ -0.54
CLK3-220ENST00000567992 PARK7Q99497 189 aaKnown RBP11.68□□□□□ -0.54
CLK3-220ENST00000567992 KIAA1683Q9H0B3 1180 aa11.68□□□□□ -0.54
CLK3-220ENST00000567992 BCRP11274 1271 aa11.67□□□□□ -0.54
CLK3-220ENST00000567992 MFAP1P55081 439 aaKnown RBP11.67□□□□□ -0.54
CLK3-220ENST00000567992 ICA1Q05084 483 aa11.67□□□□□ -0.54
CLK3-220ENST00000567992 BMP2KLQ5H9B9 411 aa11.67□□□□□ -0.54
CLK3-220ENST00000567992 KIAA1755Q5JYT7 1200 aa11.67□□□□□ -0.54
CLK3-220ENST00000567992 USP17L2Q6R6M4 530 aa11.67□□□□□ -0.54
CLK3-220ENST00000567992 TBC1D10CQ8IV04 446 aa11.67□□□□□ -0.54
CLK3-220ENST00000567992 NKX2-3Q8TAU0 364 aa11.67□□□□□ -0.54
CLK3-220ENST00000567992 INCENPQ9NQS7 918 aa11.67□□□□□ -0.54
CLK3-220ENST00000567992 PPP4R2Q9NY27 417 aa11.67□□□□□ -0.54
CLK3-220ENST00000567992 CENPFP49454 3210 aa11.67□□□□□ -0.54
CLK3-220ENST00000567992 SGSM2O43147 1006 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 EEF2P13639 858 aaKnown RBP11.66□□□□□ -0.54
CLK3-220ENST00000567992 VCAM1P19320 739 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 CTGFP29279 349 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 HOXA7P31268 230 aaPredicted RBP11.66□□□□□ -0.54
CLK3-220ENST00000567992 SP3Q02447 781 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 PDE4BQ07343 736 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 ZYXQ15942 572 aaKnown RBP11.66□□□□□ -0.54
CLK3-220ENST00000567992 POTEEQ6S8J3 1075 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 CD99L2Q8TCZ2 262 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 FEZ1Q99689 392 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 DSCC1Q9BVC3 393 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 ASCC2Q9H1I8 757 aaPredicted RBP11.66□□□□□ -0.54
CLK3-220ENST00000567992 MKNK2Q9HBH9 465 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 TMOD4Q9NZQ9 345 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 CPA4Q9UI42 421 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 TMX2Q9Y320 296 aa11.66□□□□□ -0.54
CLK3-220ENST00000567992 ORC4O43929 436 aa11.65□□□□□ -0.54
CLK3-220ENST00000567992 SLC3A2P08195 630 aaKnown RBP11.65□□□□□ -0.54
CLK3-220ENST00000567992 USP14P54578 494 aa11.65□□□□□ -0.54
CLK3-220ENST00000567992 HAND2P61296 217 aa11.65□□□□□ -0.54
CLK3-220ENST00000567992 FAM47AQ5JRC9 791 aa11.65□□□□□ -0.54
CLK3-220ENST00000567992 CTU1Q7Z7A3 348 aaKnown RBP11.65□□□□□ -0.54
CLK3-220ENST00000567992 NEDD1Q8NHV4 660 aa11.65□□□□□ -0.54
CLK3-220ENST00000567992 ARHGAP39Q9C0H5 1083 aa11.65□□□□□ -0.54
CLK3-220ENST00000567992 KANSL2Q9H9L4 492 aa11.65□□□□□ -0.54
CLK3-220ENST00000567992 ZNF287Q9HBT7 754 aa11.65□□□□□ -0.54
CLK3-220ENST00000567992 PNMA3Q9UL41 463 aa11.65□□□□□ -0.54
CLK3-220ENST00000567992 NEDD4P46934 1319 aa11.64□□□□□ -0.55
CLK3-220ENST00000567992 LACTBP83111 547 aaPredicted RBP11.64□□□□□ -0.55
CLK3-220ENST00000567992 PTH1RQ03431 593 aa11.64□□□□□ -0.55
CLK3-220ENST00000567992 PABPC4Q13310 644 aaKnown RBP eCLIP11.64□□□□□ -0.55
CLK3-220ENST00000567992 STAG1Q8WVM7 1258 aa11.64□□□□□ -0.55
CLK3-220ENST00000567992 CEP95Q96GE4 821 aa11.64□□□□□ -0.55
CLK3-220ENST00000567992 ERO1AQ96HE7 468 aa11.64□□□□□ -0.55
CLK3-220ENST00000567992 MCOLN1Q9GZU1 580 aa11.64□□□□□ -0.55
CLK3-220ENST00000567992 VCPKMTQ9H867 229 aa11.64□□□□□ -0.55
CLK3-220ENST00000567992 ARHGEF10LQ9HCE6 1279 aa11.64□□□□□ -0.55
CLK3-220ENST00000567992 IL17RBQ9NRM6 502 aa11.64□□□□□ -0.55
CLK3-220ENST00000567992 NYAP2Q9P242 653 aa11.64□□□□□ -0.55
CLK3-220ENST00000567992 PLXNB2O15031 1838 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 PEX10O60683 326 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 OSBPP22059 807 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 NOVP48745 357 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 HERVK_113P62684 666 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 TFAP4Q01664 338 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 AKNAD1Q5T1N1 836 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 CATSPERGQ6ZRH7 1159 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 OTOP1Q7RTM1 612 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 TNS4Q8IZW8 715 aa11.63□□□□□ -0.55
CLK3-220ENST00000567992 ZNF444Q8N0Y2 327 aaPredicted RBP11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms