RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 RAET1EQ8TD07 263 aa22.41■■□□□ 1.18
CLN3-227ENST00000567495 ZNF333Q96JL9 665 aa22.41■■□□□ 1.18
CLN3-227ENST00000567495 NACAP1Q9BZK3 213 aa22.41■■□□□ 1.18
CLN3-227ENST00000567495 MORF4L1Q9UBU8 362 aa22.41■■□□□ 1.18
CLN3-227ENST00000567495 PTPRFP10586 1907 aa22.41■■□□□ 1.18
CLN3-227ENST00000567495 DDX60LQ5H9U9 1706 aaKnown RBP22.4■■□□□ 1.18
CLN3-227ENST00000567495 USP17L15C9J2P7 530 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 USP17L13C9JLJ4 530 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 USP17L11C9JVI0 530 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 USP17L18D6R9N7 530 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 USP17L22D6RA61 530 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 USP17L17D6RBQ6 530 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 USP17L19D6RCP7 530 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 USP17L20D6RJB6 530 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 EVX2Q03828 476 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 USP17L24Q0WX57 530 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 ZMYM1Q5SVZ6 1142 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 ACER1Q8TDN7 264 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 COA7Q96BR5 231 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 P2RX7Q99572 595 aaKnown RBP22.4■■□□□ 1.18
CLN3-227ENST00000567495 LNPKQ9C0E8 428 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 SH2D4AQ9H788 454 aa22.4■■□□□ 1.18
CLN3-227ENST00000567495 CYP2D7A0A087X1C5 515 aa22.39■■□□□ 1.17
CLN3-227ENST00000567495 PATL2C9JE40 543 aaKnown RBP22.39■■□□□ 1.17
CLN3-227ENST00000567495 TNPO2O14787 897 aaKnown RBP22.39■■□□□ 1.17
CLN3-227ENST00000567495 HERVK_113P62684 666 aa22.39■■□□□ 1.17
CLN3-227ENST00000567495 NUCB1Q02818 461 aa22.39■■□□□ 1.17
CLN3-227ENST00000567495 CHD1LQ86WJ1 897 aa22.39■■□□□ 1.17
CLN3-227ENST00000567495 TMEM106CQ9BVX2 250 aa22.39■■□□□ 1.17
CLN3-227ENST00000567495 ZNF287Q9HBT7 754 aa22.39■■□□□ 1.17
CLN3-227ENST00000567495 HTTP42858 3142 aa22.39■■□□□ 1.17
CLN3-227ENST00000567495 ATAD5Q96QE3 1844 aa22.38■■□□□ 1.17
CLN3-227ENST00000567495 LOC285556D6RIA3 1793 aa22.38■■□□□ 1.17
CLN3-227ENST00000567495 M0R2C6 588 aa22.38■■□□□ 1.17
CLN3-227ENST00000567495 ECM2O94769 699 aaPredicted RBP22.38■■□□□ 1.17
CLN3-227ENST00000567495 IGHDP01880 384 aa22.38■■□□□ 1.17
CLN3-227ENST00000567495 APPP05067 770 aa22.38■■□□□ 1.17
CLN3-227ENST00000567495 PRKCZQ05513 592 aa22.38■■□□□ 1.17
CLN3-227ENST00000567495 GPRC5AQ8NFJ5 357 aa22.38■■□□□ 1.17
CLN3-227ENST00000567495 NAV1Q8NEY1 1877 aa22.38■■□□□ 1.17
CLN3-227ENST00000567495 VCAM1P19320 739 aa22.37■■□□□ 1.17
CLN3-227ENST00000567495 GRK4P32298 578 aa22.37■■□□□ 1.17
CLN3-227ENST00000567495 TDO2P48775 406 aa22.37■■□□□ 1.17
CLN3-227ENST00000567495 ZYXQ15942 572 aaKnown RBP22.37■■□□□ 1.17
CLN3-227ENST00000567495 KANSL2Q9H9L4 492 aa22.37■■□□□ 1.17
CLN3-227ENST00000567495 ARHGEF10LQ9HCE6 1279 aa22.37■■□□□ 1.17
CLN3-227ENST00000567495 AKR1B1P15121 316 aa22.36■■□□□ 1.17
CLN3-227ENST00000567495 ICA1Q05084 483 aa22.36■■□□□ 1.17
CLN3-227ENST00000567495 IRF5Q13568 498 aa22.36■■□□□ 1.17
CLN3-227ENST00000567495 B4GALNT3Q6L9W6 998 aa22.36■■□□□ 1.17
CLN3-227ENST00000567495 CATSPERGQ6ZRH7 1159 aa22.36■■□□□ 1.17
CLN3-227ENST00000567495 SLAIN1Q8ND83 568 aa22.36■■□□□ 1.17
CLN3-227ENST00000567495 LPAR1Q92633 364 aa22.36■■□□□ 1.17
CLN3-227ENST00000567495 MINDY4BA8MYZ0 360 aa22.35■■□□□ 1.17
CLN3-227ENST00000567495 FLT3LGP49771 235 aa22.35■■□□□ 1.17
CLN3-227ENST00000567495 IFNL3Q8IZI9 196 aa22.35■■□□□ 1.17
CLN3-227ENST00000567495 SH3TC2Q8TF17 1288 aa22.35■■□□□ 1.17
CLN3-227ENST00000567495 MKNK2Q9HBH9 465 aa22.35■■□□□ 1.17
CLN3-227ENST00000567495 TMX2Q9Y320 296 aa22.35■■□□□ 1.17
CLN3-227ENST00000567495 RABGAP1Q9Y3P9 1069 aa22.35■■□□□ 1.17
CLN3-227ENST00000567495 MYH7P12883 1935 aa22.35■■□□□ 1.17
CLN3-227ENST00000567495 A0A1W2PRG0 241 aa22.34■■□□□ 1.17
CLN3-227ENST00000567495 SLC3A2P08195 630 aaKnown RBP22.34■■□□□ 1.17
CLN3-227ENST00000567495 LBX2Q6XYB7 198 aa22.34■■□□□ 1.17
CLN3-227ENST00000567495 PXYLP1Q8TE99 480 aa22.34■■□□□ 1.17
CLN3-227ENST00000567495 OSBPL3Q9H4L5 887 aa22.34■■□□□ 1.17
CLN3-227ENST00000567495 EPB41L4AQ9HCS5 686 aaPredicted RBP22.34■■□□□ 1.17
CLN3-227ENST00000567495 HELLSQ9NRZ9 838 aa22.34■■□□□ 1.17
CLN3-227ENST00000567495 RBPJLQ9UBG7 517 aa22.34■■□□□ 1.17
CLN3-227ENST00000567495 ROBO3Q96MS0 1386 aa22.34■■□□□ 1.17
CLN3-227ENST00000567495 SMIM22K7EJ46 135 aa22.33■■□□□ 1.17
CLN3-227ENST00000567495 MAPK4P31152 587 aa22.33■■□□□ 1.17
CLN3-227ENST00000567495 UBXN2AP68543 259 aa22.33■■□□□ 1.17
CLN3-227ENST00000567495 CCNA1P78396 465 aa22.33■■□□□ 1.17
CLN3-227ENST00000567495 CCAR1Q8IX12 1150 aaKnown RBP22.33■■□□□ 1.17
CLN3-227ENST00000567495 SEC62Q99442 399 aaKnown RBP22.33■■□□□ 1.17
CLN3-227ENST00000567495 NAPBQ9H115 298 aa22.33■■□□□ 1.17
CLN3-227ENST00000567495 RPAP3Q9H6T3 665 aaPredicted RBP22.33■■□□□ 1.17
CLN3-227ENST00000567495 HOXC10Q9NYD6 342 aa22.33■■□□□ 1.17
CLN3-227ENST00000567495 GABRQQ9UN88 632 aa22.33■■□□□ 1.17
CLN3-227ENST00000567495 ADCY3O60266 1144 aa22.32■■□□□ 1.16
CLN3-227ENST00000567495 ERVK-9P63128 1117 aa22.32■■□□□ 1.16
CLN3-227ENST00000567495 ERVK-24P63145 666 aa22.32■■□□□ 1.16
CLN3-227ENST00000567495 SIAH1Q8IUQ4 282 aa22.32■■□□□ 1.16
CLN3-227ENST00000567495 PLEKHM2Q8IWE5 1019 aa22.32■■□□□ 1.16
CLN3-227ENST00000567495 TXNRD2Q9NNW7 524 aa22.32■■□□□ 1.16
CLN3-227ENST00000567495 BIN2Q9UBW5 565 aaPredicted RBP22.32■■□□□ 1.16
CLN3-227ENST00000567495 RASA1P20936 1047 aa22.31■■□□□ 1.16
CLN3-227ENST00000567495 PDE4BQ07343 736 aa22.31■■□□□ 1.16
CLN3-227ENST00000567495 COG2Q14746 738 aa22.31■■□□□ 1.16
CLN3-227ENST00000567495 ZNF444Q8N0Y2 327 aaPredicted RBP22.31■■□□□ 1.16
CLN3-227ENST00000567495 VCPKMTQ9H867 229 aa22.31■■□□□ 1.16
CLN3-227ENST00000567495 KIAA0100Q14667 2235 aaKnown RBP22.31■■□□□ 1.16
CLN3-227ENST00000567495 POTEFA5A3E0 1075 aa22.3■■□□□ 1.16
CLN3-227ENST00000567495 TRIM6-TRIM34B2RNG4 842 aa22.3■■□□□ 1.16
CLN3-227ENST00000567495 SOCS4Q8WXH5 440 aa22.3■■□□□ 1.16
CLN3-227ENST00000567495 PAGR1Q9BTK6 254 aa22.3■■□□□ 1.16
CLN3-227ENST00000567495 GOPCQ9HD26 462 aa22.3■■□□□ 1.16
CLN3-227ENST00000567495 EEF2P13639 858 aaKnown RBP22.29■■□□□ 1.16
CLN3-227ENST00000567495 MCMDC2Q4G0Z9 681 aa22.29■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms