RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 AS3MTQ9HBK9 375 aa23.23■■□□□ 1.31
CLN3-225ENST00000566824 GTF3C3Q9Y5Q9 886 aa23.23■■□□□ 1.31
CLN3-225ENST00000566824 TBC1D8O95759 1140 aa23.22■■□□□ 1.31
CLN3-225ENST00000566824 SLC3A2P08195 630 aaKnown RBP23.22■■□□□ 1.31
CLN3-225ENST00000566824 PDE4BQ07343 736 aa23.22■■□□□ 1.31
CLN3-225ENST00000566824 ZYXQ15942 572 aaKnown RBP23.22■■□□□ 1.31
CLN3-225ENST00000566824 TREML2Q5T2D2 321 aa23.22■■□□□ 1.31
CLN3-225ENST00000566824 MAP4K1Q92918 833 aa23.22■■□□□ 1.31
CLN3-225ENST00000566824 NEDD4P46934 1319 aa23.21■■□□□ 1.31
CLN3-225ENST00000566824 MYH4Q9Y623 1939 aa23.21■■□□□ 1.31
CLN3-225ENST00000566824 IGKV6D-41A0A0C4DH26 115 aa23.21■■□□□ 1.31
CLN3-225ENST00000566824 ZNF213O14771 459 aa23.21■■□□□ 1.31
CLN3-225ENST00000566824 ORC4O43929 436 aa23.21■■□□□ 1.31
CLN3-225ENST00000566824 BACE1P56817 501 aa23.21■■□□□ 1.31
CLN3-225ENST00000566824 TFAP4Q01664 338 aa23.21■■□□□ 1.31
CLN3-225ENST00000566824 SH3D19Q5HYK7 790 aa23.21■■□□□ 1.31
CLN3-225ENST00000566824 KIAA1755Q5JYT7 1200 aa23.21■■□□□ 1.31
CLN3-225ENST00000566824 ZNF444Q8N0Y2 327 aaPredicted RBP23.21■■□□□ 1.31
CLN3-225ENST00000566824 EMILIN3Q9NT22 766 aa23.21■■□□□ 1.31
CLN3-225ENST00000566824 USP17L10C9JJH3 530 aa23.2■■□□□ 1.3
CLN3-225ENST00000566824 AKNAD1Q5T1N1 836 aa23.2■■□□□ 1.3
CLN3-225ENST00000566824 STAG1Q8WVM7 1258 aa23.2■■□□□ 1.3
CLN3-225ENST00000566824 TBC1D2Q9BYX2 928 aa23.2■■□□□ 1.3
CLN3-225ENST00000566824 RBM8AQ9Y5S9 174 aaKnown RBP23.2■■□□□ 1.3
CLN3-225ENST00000566824 NMT2O60551 498 aa23.19■■□□□ 1.3
CLN3-225ENST00000566824 CYP21A2P08686 494 aa23.19■■□□□ 1.3
CLN3-225ENST00000566824 HSPA8P11142 646 aaKnown RBP23.19■■□□□ 1.3
CLN3-225ENST00000566824 EEF2P13639 858 aaKnown RBP23.19■■□□□ 1.3
CLN3-225ENST00000566824 ICA1Q05084 483 aa23.19■■□□□ 1.3
CLN3-225ENST00000566824 RRP12Q5JTH9 1297 aaKnown RBP23.19■■□□□ 1.3
CLN3-225ENST00000566824 ANKRD23Q86SG2 305 aa23.19■■□□□ 1.3
CLN3-225ENST00000566824 NEDD1Q8NHV4 660 aa23.19■■□□□ 1.3
CLN3-225ENST00000566824 BEGAINQ9BUH8 593 aa23.19■■□□□ 1.3
CLN3-225ENST00000566824 ANO2Q9NQ90 1003 aa23.19■■□□□ 1.3
CLN3-225ENST00000566824 CTNNA3Q9UI47 895 aa23.19■■□□□ 1.3
CLN3-225ENST00000566824 U3KPZ7 1027 aaPredicted RBP23.19■■□□□ 1.3
CLN3-225ENST00000566824 PDHXO00330 501 aa23.18■■□□□ 1.3
CLN3-225ENST00000566824 RANBP6O60518 1105 aaKnown RBP23.18■■□□□ 1.3
CLN3-225ENST00000566824 CRHR2Q13324 411 aa23.18■■□□□ 1.3
CLN3-225ENST00000566824 IMMTQ16891 758 aaKnown RBP23.18■■□□□ 1.3
CLN3-225ENST00000566824 CEP95Q96GE4 821 aa23.18■■□□□ 1.3
CLN3-225ENST00000566824 ZNF287Q9HBT7 754 aa23.18■■□□□ 1.3
CLN3-225ENST00000566824 IL17RBQ9NRM6 502 aa23.18■■□□□ 1.3
CLN3-225ENST00000566824 TOMM22Q9NS69 142 aa23.18■■□□□ 1.3
CLN3-225ENST00000566824 SAGE1Q9NXZ1 904 aa23.18■■□□□ 1.3
CLN3-225ENST00000566824 CASP8AP2Q9UKL3 1982 aa23.18■■□□□ 1.3
CLN3-225ENST00000566824 PLIN4Q96Q06 1357 aa23.17■■□□□ 1.3
CLN3-225ENST00000566824 ATP2B2Q01814 1243 aa23.17■■□□□ 1.3
CLN3-225ENST00000566824 MFSD6Q6ZSS7 791 aa23.17■■□□□ 1.3
CLN3-225ENST00000566824 KIAA1211Q6ZU35 1233 aa23.17■■□□□ 1.3
CLN3-225ENST00000566824 FASTKD5Q7L8L6 764 aaKnown RBP23.17■■□□□ 1.3
CLN3-225ENST00000566824 FEZ1Q99689 392 aa23.17■■□□□ 1.3
CLN3-225ENST00000566824 KIAA1683Q9H0B3 1180 aa23.17■■□□□ 1.3
CLN3-225ENST00000566824 KANSL2Q9H9L4 492 aa23.17■■□□□ 1.3
CLN3-225ENST00000566824 TSPY3P0CV98 308 aa23.16■■□□□ 1.3
CLN3-225ENST00000566824 TSPY8P0CW00 308 aa23.16■■□□□ 1.3
CLN3-225ENST00000566824 CASC1Q6TDU7 716 aa23.16■■□□□ 1.3
CLN3-225ENST00000566824 STOX1Q6ZVD7 989 aa23.16■■□□□ 1.3
CLN3-225ENST00000566824 PROCA1Q8NCQ7 364 aaPredicted RBP23.16■■□□□ 1.3
CLN3-225ENST00000566824 AGTPBP1Q9UPW5 1226 aa23.16■■□□□ 1.3
CLN3-225ENST00000566824 C19orf81C9J6K1 198 aa23.15■■□□□ 1.3
CLN3-225ENST00000566824 CYP2C8P10632 490 aa23.15■■□□□ 1.3
CLN3-225ENST00000566824 LBX1P52954 281 aa23.15■■□□□ 1.3
CLN3-225ENST00000566824 COL9A3Q14050 684 aaPredicted RBP23.15■■□□□ 1.3
CLN3-225ENST00000566824 TAF1CQ15572 869 aaPredicted RBP23.15■■□□□ 1.3
CLN3-225ENST00000566824 USP17L2Q6R6M4 530 aa23.15■■□□□ 1.3
CLN3-225ENST00000566824 MTMR4Q9NYA4 1195 aa23.15■■□□□ 1.3
CLN3-225ENST00000566824 TMX2Q9Y320 296 aa23.15■■□□□ 1.3
CLN3-225ENST00000566824 TSPY2A6NKD2 308 aa23.14■■□□□ 1.3
CLN3-225ENST00000566824 CA12O43570 354 aa23.14■■□□□ 1.3
CLN3-225ENST00000566824 ALDH1A1P00352 501 aa23.14■■□□□ 1.3
CLN3-225ENST00000566824 OTUD7BQ6GQQ9 843 aa23.14■■□□□ 1.3
CLN3-225ENST00000566824 C12orf42Q96LP6 360 aa23.14■■□□□ 1.3
CLN3-225ENST00000566824 CFHR5Q9BXR6 569 aa23.14■■□□□ 1.3
CLN3-225ENST00000566824 TMOD4Q9NZQ9 345 aa23.14■■□□□ 1.3
CLN3-225ENST00000566824 CLIP2Q9UDT6 1046 aa23.14■■□□□ 1.3
CLN3-225ENST00000566824 B4E1Z4 1266 aa23.13■■□□□ 1.29
CLN3-225ENST00000566824 CTCFP49711 727 aaPredicted RBP23.13■■□□□ 1.29
CLN3-225ENST00000566824 NECTIN1Q15223 517 aa23.13■■□□□ 1.29
CLN3-225ENST00000566824 ARHGEF10LQ9HCE6 1279 aa23.13■■□□□ 1.29
CLN3-225ENST00000566824 NYAP2Q9P242 653 aa23.13■■□□□ 1.29
CLN3-225ENST00000566824 ADGRA2Q96PE1 1338 aa23.13■■□□□ 1.29
CLN3-225ENST00000566824 ZSWIM8A7E2V4 1837 aa23.13■■□□□ 1.29
CLN3-225ENST00000566824 SLC27A2O14975 620 aa23.12■■□□□ 1.29
CLN3-225ENST00000566824 KDM4AO75164 1064 aa23.12■■□□□ 1.29
CLN3-225ENST00000566824 VCAM1P19320 739 aa23.12■■□□□ 1.29
CLN3-225ENST00000566824 SPICE1Q8N0Z3 855 aa23.12■■□□□ 1.29
CLN3-225ENST00000566824 ZKSCAN3Q9BRR0 538 aa23.12■■□□□ 1.29
CLN3-225ENST00000566824 RNF41Q9H4P4 317 aaPredicted RBP23.12■■□□□ 1.29
CLN3-225ENST00000566824 ZCCHC17Q9NP64 241 aaKnown RBP23.12■■□□□ 1.29
CLN3-225ENST00000566824 RLFQ13129 1914 aa23.12■■□□□ 1.29
CLN3-225ENST00000566824 E7EWF7 191 aa23.11■■□□□ 1.29
CLN3-225ENST00000566824 CREB3L3Q68CJ9 461 aa23.11■■□□□ 1.29
CLN3-225ENST00000566824 LRRC47Q8N1G4 583 aaKnown RBP23.11■■□□□ 1.29
CLN3-225ENST00000566824 ASCC2Q9H1I8 757 aaPredicted RBP23.11■■□□□ 1.29
CLN3-225ENST00000566824 VCPKMTQ9H867 229 aa23.11■■□□□ 1.29
CLN3-225ENST00000566824 PARP14Q460N5 1801 aa23.11■■□□□ 1.29
CLN3-225ENST00000566824 PEX10O60683 326 aa23.1■■□□□ 1.29
CLN3-225ENST00000566824 PCP11498 1178 aaKnown RBP23.1■■□□□ 1.29
CLN3-225ENST00000566824 USP14P54578 494 aa23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms