RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 USP17L17D6RBQ6 530 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 USP17L19D6RCP7 530 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 USP17L20D6RJB6 530 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 RNF113AO15541 343 aaKnown RBP24.92■■□□□ 1.58
CLN3-219ENST00000565778 USP17L24Q0WX57 530 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 ANKRD45Q5TZF3 282 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 C12orf60Q5U649 245 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 GPRC5AQ8NFJ5 357 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 C12orf42Q96LP6 360 aa24.92■■□□□ 1.58
CLN3-219ENST00000565778 ZFYP08048 801 aaPredicted RBP24.91■■□□□ 1.58
CLN3-219ENST00000565778 IRF5Q13568 498 aa24.91■■□□□ 1.58
CLN3-219ENST00000565778 STRBPQ96SI9 672 aaKnown RBP24.91■■□□□ 1.58
CLN3-219ENST00000565778 RBPJLQ9UBG7 517 aa24.91■■□□□ 1.58
CLN3-219ENST00000565778 PEX10O60683 326 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 CCL5P13501 91 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 ELNP15502 786 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 CDK8P49336 464 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 LRRFIP1Q32MZ4 808 aaKnown RBP24.9■■□□□ 1.58
CLN3-219ENST00000565778 CTR9Q6PD62 1173 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 TMEM179Q6ZVK1 233 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 CCAR1Q8IX12 1150 aaKnown RBP24.9■■□□□ 1.58
CLN3-219ENST00000565778 OTUD7AQ8TE49 926 aaPredicted RBP24.9■■□□□ 1.58
CLN3-219ENST00000565778 PXYLP1Q8TE99 480 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 APPBP2Q92624 585 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 OSBP2Q969R2 916 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 RNF208Q9H0X6 261 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 TXNRD2Q9NNW7 524 aa24.9■■□□□ 1.58
CLN3-219ENST00000565778 GLRX3O76003 335 aaKnown RBP24.89■■□□□ 1.58
CLN3-219ENST00000565778 GTF3C2Q8WUA4 911 aaPredicted RBP24.89■■□□□ 1.58
CLN3-219ENST00000565778 PAGR1Q9BTK6 254 aa24.89■■□□□ 1.58
CLN3-219ENST00000565778 NAV1Q8NEY1 1877 aa24.88■■□□□ 1.57
CLN3-219ENST00000565778 SMIM22K7EJ46 135 aa24.88■■□□□ 1.57
CLN3-219ENST00000565778 Q3C1V9 767 aa24.88■■□□□ 1.57
CLN3-219ENST00000565778 CATSPERGQ6ZRH7 1159 aa24.88■■□□□ 1.57
CLN3-219ENST00000565778 GCC1Q96CN9 775 aa24.88■■□□□ 1.57
CLN3-219ENST00000565778 CCDC17Q96LX7 622 aa24.88■■□□□ 1.57
CLN3-219ENST00000565778 MGAMO43451 1857 aa24.87■■□□□ 1.57
CLN3-219ENST00000565778 A0A1W2PRG0 241 aa24.87■■□□□ 1.57
CLN3-219ENST00000565778 AKR1B1P15121 316 aa24.87■■□□□ 1.57
CLN3-219ENST00000565778 VCAM1P19320 739 aa24.87■■□□□ 1.57
CLN3-219ENST00000565778 MX1P20591 662 aa24.87■■□□□ 1.57
CLN3-219ENST00000565778 HDAC1Q13547 482 aaPredicted RBP24.87■■□□□ 1.57
CLN3-219ENST00000565778 NKX2-3Q8TAU0 364 aa24.87■■□□□ 1.57
CLN3-219ENST00000565778 PI4K2BQ8TCG2 481 aa24.87■■□□□ 1.57
CLN3-219ENST00000565778 RPAP3Q9H6T3 665 aaPredicted RBP24.87■■□□□ 1.57
CLN3-219ENST00000565778 GJD2Q9UKL4 321 aa24.87■■□□□ 1.57
CLN3-219ENST00000565778 KIAA0100Q14667 2235 aaKnown RBP24.86■■□□□ 1.57
CLN3-219ENST00000565778 GSG1L2A8MUP6 293 aa24.86■■□□□ 1.57
CLN3-219ENST00000565778 APPP05067 770 aa24.86■■□□□ 1.57
CLN3-219ENST00000565778 ERVK-9P63128 1117 aa24.86■■□□□ 1.57
CLN3-219ENST00000565778 ERVK-24P63145 666 aa24.86■■□□□ 1.57
CLN3-219ENST00000565778 C16orf86Q6ZW13 317 aa24.86■■□□□ 1.57
CLN3-219ENST00000565778 ARPP21Q9UBL0 812 aaPredicted RBP24.86■■□□□ 1.57
CLN3-219ENST00000565778 INHAP05111 366 aa24.85■■□□□ 1.57
CLN3-219ENST00000565778 GJB1P08034 283 aa24.85■■□□□ 1.57
CLN3-219ENST00000565778 MAPK4P31152 587 aa24.85■■□□□ 1.57
CLN3-219ENST00000565778 AAMPQ13685 434 aa24.85■■□□□ 1.57
CLN3-219ENST00000565778 PRPF38BQ5VTL8 546 aaKnown RBP24.85■■□□□ 1.57
CLN3-219ENST00000565778 FSD1Q9BTV5 496 aa24.85■■□□□ 1.57
CLN3-219ENST00000565778 UNC93B1Q9H1C4 597 aa24.85■■□□□ 1.57
CLN3-219ENST00000565778 ARHGEF10LQ9HCE6 1279 aa24.85■■□□□ 1.57
CLN3-219ENST00000565778 RABGAP1Q9Y3P9 1069 aa24.85■■□□□ 1.57
CLN3-219ENST00000565778 DDX60LQ5H9U9 1706 aaKnown RBP24.85■■□□□ 1.57
CLN3-219ENST00000565778 MINDY4BA8MYZ0 360 aa24.84■■□□□ 1.57
CLN3-219ENST00000565778 GPAA1O43292 621 aa24.84■■□□□ 1.57
CLN3-219ENST00000565778 GNAT2P19087 354 aa24.84■■□□□ 1.57
CLN3-219ENST00000565778 SBK1Q52WX2 424 aa24.84■■□□□ 1.57
CLN3-219ENST00000565778 GIMAP6Q6P9H5 292 aa24.84■■□□□ 1.57
CLN3-219ENST00000565778 POTEEQ6S8J3 1075 aa24.84■■□□□ 1.57
CLN3-219ENST00000565778 STK11IPQ8N1F8 1099 aa24.84■■□□□ 1.57
CLN3-219ENST00000565778 CWC22Q9HCG8 908 aaKnown RBP24.84■■□□□ 1.57
CLN3-219ENST00000565778 GJA8P48165 433 aa24.83■■□□□ 1.57
CLN3-219ENST00000565778 ICA1Q05084 483 aa24.83■■□□□ 1.57
CLN3-219ENST00000565778 SIAH1Q8IUQ4 282 aa24.83■■□□□ 1.57
CLN3-219ENST00000565778 NUDT12Q9BQG2 462 aa24.83■■□□□ 1.57
CLN3-219ENST00000565778 PATL2C9JE40 543 aaKnown RBP24.82■■□□□ 1.56
CLN3-219ENST00000565778 M0R2C6 588 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 CYP2B6P20813 491 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 CCNA1P78396 465 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 ATP2B2Q01814 1243 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 COG2Q14746 738 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 CLEC10AQ8IUN9 316 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 PORCNQ9H237 461 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 RWDD1Q9H446 243 aaPredicted RBP24.82■■□□□ 1.56
CLN3-219ENST00000565778 SH2D4AQ9H788 454 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 MKNK2Q9HBH9 465 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 HOXC10Q9NYD6 342 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 TMX2Q9Y320 296 aa24.82■■□□□ 1.56
CLN3-219ENST00000565778 RBBP6Q7Z6E9 1792 aaKnown RBP24.82■■□□□ 1.56
CLN3-219ENST00000565778 MYH7P12883 1935 aa24.81■■□□□ 1.56
CLN3-219ENST00000565778 TDO2P48775 406 aa24.81■■□□□ 1.56
CLN3-219ENST00000565778 PLEKHH3Q7Z736 793 aa24.81■■□□□ 1.56
CLN3-219ENST00000565778 SEC62Q99442 399 aaKnown RBP24.81■■□□□ 1.56
CLN3-219ENST00000565778 TANGO6Q9C0B7 1094 aa24.81■■□□□ 1.56
CLN3-219ENST00000565778 KANSL2Q9H9L4 492 aa24.81■■□□□ 1.56
CLN3-219ENST00000565778 BAZ2AQ9UIF9 1905 aaKnown RBP24.8■■□□□ 1.56
CLN3-219ENST00000565778 CNMDO75829 334 aa24.8■■□□□ 1.56
CLN3-219ENST00000565778 SGPL1O95470 568 aa24.8■■□□□ 1.56
CLN3-219ENST00000565778 WDR78Q5VTH9 848 aa24.8■■□□□ 1.56
CLN3-219ENST00000565778 GPR142Q7Z601 462 aa24.8■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms