RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 NMIQ13287 307 aaPredicted RBP20.62■□□□□ 0.89
CLN3-217ENST00000565354 FASTKD5Q7L8L6 764 aaKnown RBP20.62■□□□□ 0.89
CLN3-217ENST00000565354 FOXP4Q8IVH2 680 aaPredicted RBP20.62■□□□□ 0.89
CLN3-217ENST00000565354 A0A0G2JLL6 359 aaPredicted RBP20.61■□□□□ 0.89
CLN3-217ENST00000565354 FAM196BA6NMK8 535 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 SOX1O00570 391 aaPredicted RBP20.61■□□□□ 0.89
CLN3-217ENST00000565354 TBC1D12O60347 775 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 INHAP05111 366 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 ELNP15502 786 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 TDO2P48775 406 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 MCMDC2Q4G0Z9 681 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 CCDC129Q6ZRS4 1044 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 PRRT2Q7Z6L0 340 aaPredicted RBP20.61■□□□□ 0.89
CLN3-217ENST00000565354 SKAP1Q86WV1 359 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 PXYLP1Q8TE99 480 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 FAM227BQ96M60 508 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 NACAP1Q9BZK3 213 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 ZHX2Q9Y6X8 837 aa20.61■□□□□ 0.89
CLN3-217ENST00000565354 PHIPQ8WWQ0 1821 aa20.6■□□□□ 0.89
CLN3-217ENST00000565354 A0A0D9SFI3 127 aa20.6■□□□□ 0.89
CLN3-217ENST00000565354 TFRCP02786 760 aaKnown RBP20.6■□□□□ 0.89
CLN3-217ENST00000565354 MFAP1P55081 439 aaKnown RBP20.6■□□□□ 0.89
CLN3-217ENST00000565354 IRF5Q13568 498 aa20.6■□□□□ 0.89
CLN3-217ENST00000565354 PICK1Q9NRD5 415 aa20.6■□□□□ 0.89
CLN3-217ENST00000565354 SLC45A1Q9Y2W3 748 aa20.6■□□□□ 0.89
CLN3-217ENST00000565354 DOCK1Q14185 1865 aa20.59■□□□□ 0.89
CLN3-217ENST00000565354 PHF20L1A8MW92 1017 aa20.59■□□□□ 0.89
CLN3-217ENST00000565354 PATL2C9JE40 543 aaKnown RBP20.59■□□□□ 0.89
CLN3-217ENST00000565354 TNPO2O14787 897 aaKnown RBP20.59■□□□□ 0.89
CLN3-217ENST00000565354 SLURP2P0DP57 97 aa20.59■□□□□ 0.89
CLN3-217ENST00000565354 PTPRAP18433 802 aa20.59■□□□□ 0.89
CLN3-217ENST00000565354 CWC27Q6UX04 472 aaKnown RBP20.59■□□□□ 0.89
CLN3-217ENST00000565354 SCYL3Q8IZE3 742 aa20.59■□□□□ 0.89
CLN3-217ENST00000565354 LRCH3Q96II8 777 aa20.59■□□□□ 0.89
CLN3-217ENST00000565354 DEFB118Q96PH6 123 aa20.59■□□□□ 0.89
CLN3-217ENST00000565354 PAK6Q9NQU5 681 aaPredicted RBP20.59■□□□□ 0.89
CLN3-217ENST00000565354 ARPP21Q9UBL0 812 aaPredicted RBP20.59■□□□□ 0.89
CLN3-217ENST00000565354 SERPINB13Q9UIV8 391 aa20.59■□□□□ 0.89
CLN3-217ENST00000565354 GSG1L2A8MUP6 293 aa20.58■□□□□ 0.89
CLN3-217ENST00000565354 GIMAP6Q6P9H5 292 aa20.58■□□□□ 0.89
CLN3-217ENST00000565354 GADL1Q6ZQY3 521 aa20.58■□□□□ 0.89
CLN3-217ENST00000565354 NAPBQ9H115 298 aa20.58■□□□□ 0.89
CLN3-217ENST00000565354 EHD4Q9H223 541 aa20.58■□□□□ 0.89
CLN3-217ENST00000565354 AFG3L2Q9Y4W6 797 aa20.58■□□□□ 0.89
CLN3-217ENST00000565354 DDX60LQ5H9U9 1706 aaKnown RBP20.58■□□□□ 0.88
CLN3-217ENST00000565354 BAZ2AQ9UIF9 1905 aaKnown RBP20.57■□□□□ 0.88
CLN3-217ENST00000565354 USP17L12C9JPN9 530 aa20.57■□□□□ 0.88
CLN3-217ENST00000565354 USP17L21D6R901 530 aa20.57■□□□□ 0.88
CLN3-217ENST00000565354 PLCD1P51178 756 aa20.57■□□□□ 0.88
CLN3-217ENST00000565354 MAP3K10Q02779 954 aa20.57■□□□□ 0.88
CLN3-217ENST00000565354 RUFY2Q8WXA3 655 aa20.57■□□□□ 0.88
CLN3-217ENST00000565354 CRISPLD2Q9H0B8 497 aa20.57■□□□□ 0.88
CLN3-217ENST00000565354 CCDC171Q6TFL3 1326 aa20.56■□□□□ 0.88
CLN3-217ENST00000565354 SIPA1L1O43166 1804 aa20.56■□□□□ 0.88
CLN3-217ENST00000565354 MINDY4BA8MYZ0 360 aa20.56■□□□□ 0.88
CLN3-217ENST00000565354 CTNND1O60716 968 aaKnown RBP20.56■□□□□ 0.88
CLN3-217ENST00000565354 CYP2D6P10635 497 aa20.56■□□□□ 0.88
CLN3-217ENST00000565354 IFNL3Q8IZI9 196 aa20.56■□□□□ 0.88
CLN3-217ENST00000565354 SMCR8Q8TEV9 937 aaPredicted RBP20.56■□□□□ 0.88
CLN3-217ENST00000565354 PAWRQ96IZ0 340 aaKnown RBP20.56■□□□□ 0.88
CLN3-217ENST00000565354 CTR9Q6PD62 1173 aa20.55■□□□□ 0.88
CLN3-217ENST00000565354 EPB41L4AQ9HCS5 686 aaPredicted RBP20.55■□□□□ 0.88
CLN3-217ENST00000565354 CYP2D7A0A087X1C5 515 aa20.54■□□□□ 0.88
CLN3-217ENST00000565354 BMP2KLQ5H9B9 411 aa20.54■□□□□ 0.88
CLN3-217ENST00000565354 C12orf60Q5U649 245 aa20.54■□□□□ 0.88
CLN3-217ENST00000565354 NECAB2Q7Z6G3 386 aa20.54■□□□□ 0.88
CLN3-217ENST00000565354 ZNF589Q86UQ0 364 aaPredicted RBP20.54■□□□□ 0.88
CLN3-217ENST00000565354 METTL16Q86W50 562 aaKnown RBP20.54■□□□□ 0.88
CLN3-217ENST00000565354 COA7Q96BR5 231 aa20.54■□□□□ 0.88
CLN3-217ENST00000565354 SWAP70Q9UH65 585 aa20.54■□□□□ 0.88
CLN3-217ENST00000565354 TAOK2Q9UL54 1235 aa20.54■□□□□ 0.88
CLN3-217ENST00000565354 GDF11O95390 407 aa20.53■□□□□ 0.88
CLN3-217ENST00000565354 BMP8BP34820 402 aa20.53■□□□□ 0.88
CLN3-217ENST00000565354 CAP2P40123 477 aa20.53■□□□□ 0.88
CLN3-217ENST00000565354 CERKLQ49MI3 558 aaPredicted RBP20.53■□□□□ 0.88
CLN3-217ENST00000565354 SBK1Q52WX2 424 aa20.53■□□□□ 0.88
CLN3-217ENST00000565354 DNAJC18Q9H819 358 aa20.53■□□□□ 0.88
CLN3-217ENST00000565354 AGTPBP1Q9UPW5 1226 aa20.53■□□□□ 0.88
CLN3-217ENST00000565354 TRIM75PA6NK02 468 aa20.52■□□□□ 0.88
CLN3-217ENST00000565354 SLC3A2P08195 630 aaKnown RBP20.52■□□□□ 0.88
CLN3-217ENST00000565354 CHMLP26374 656 aa20.52■□□□□ 0.88
CLN3-217ENST00000565354 VPS53Q5VIR6 699 aa20.52■□□□□ 0.88
CLN3-217ENST00000565354 GPR153Q6NV75 609 aa20.52■□□□□ 0.88
CLN3-217ENST00000565354 STK11IPQ8N1F8 1099 aa20.52■□□□□ 0.88
CLN3-217ENST00000565354 ANKRD13CQ8N6S4 541 aa20.52■□□□□ 0.88
CLN3-217ENST00000565354 DIS3LQ8TF46 1054 aaKnown RBP20.52■□□□□ 0.88
CLN3-217ENST00000565354 DYNLL2Q96FJ2 89 aa20.52■□□□□ 0.88
CLN3-217ENST00000565354 GDF15Q99988 308 aa20.52■□□□□ 0.88
CLN3-217ENST00000565354 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.52■□□□□ 0.88
CLN3-217ENST00000565354 CABP5Q9NP86 173 aa20.52■□□□□ 0.88
CLN3-217ENST00000565354 RAD50Q92878 1312 aa20.52■□□□□ 0.87
CLN3-217ENST00000565354 MPHOSPH10O00566 681 aaKnown RBP20.51■□□□□ 0.87
CLN3-217ENST00000565354 ASNSP08243 561 aa20.51■□□□□ 0.87
CLN3-217ENST00000565354 HSPD1P10809 573 aaKnown RBP20.51■□□□□ 0.87
CLN3-217ENST00000565354 MNX1P50219 401 aaPredicted RBP20.51■□□□□ 0.87
CLN3-217ENST00000565354 EVX2Q03828 476 aa20.51■□□□□ 0.87
CLN3-217ENST00000565354 GABPAQ06546 454 aa20.51■□□□□ 0.87
CLN3-217ENST00000565354 CASC1Q6TDU7 716 aa20.51■□□□□ 0.87
CLN3-217ENST00000565354 ANKLE1Q8NAG6 615 aa20.51■□□□□ 0.87
CLN3-217ENST00000565354 ATAD5Q96QE3 1844 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms