RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 USP17L13C9JLJ4 530 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 USP17L11C9JVI0 530 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 USP17L18D6R9N7 530 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 USP17L22D6RA61 530 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 USP17L17D6RBQ6 530 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 USP17L19D6RCP7 530 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 USP17L20D6RJB6 530 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 APBB1O00213 710 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 GOLIM4O00461 696 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 USP17L24Q0WX57 530 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 RAB3GAP1Q15042 981 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 ANKLE1Q8NAG6 615 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 ACER1Q8TDN7 264 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 PRO3102Q9H379 93 aa20.76■□□□□ 0.91
CLN3-216ENST00000565316 CHMP4BQ9H444 224 aaKnown RBP20.76■□□□□ 0.91
CLN3-216ENST00000565316 HMX1Q9NP08 348 aaPredicted RBP20.76■□□□□ 0.91
CLN3-216ENST00000565316 POLR3DP05423 398 aaPredicted RBP20.75■□□□□ 0.91
CLN3-216ENST00000565316 CYP2B6P20813 491 aa20.75■□□□□ 0.91
CLN3-216ENST00000565316 GUCY1A2P33402 732 aa20.75■□□□□ 0.91
CLN3-216ENST00000565316 MORN1Q5T089 497 aa20.75■□□□□ 0.91
CLN3-216ENST00000565316 CATSPERGQ6ZRH7 1159 aa20.75■□□□□ 0.91
CLN3-216ENST00000565316 PAWRQ96IZ0 340 aaKnown RBP20.75■□□□□ 0.91
CLN3-216ENST00000565316 DNAJC2Q99543 621 aaKnown RBP20.75■□□□□ 0.91
CLN3-216ENST00000565316 FEZ1Q99689 392 aa20.75■□□□□ 0.91
CLN3-216ENST00000565316 PORCNQ9H237 461 aa20.75■□□□□ 0.91
CLN3-216ENST00000565316 CABP5Q9NP86 173 aa20.75■□□□□ 0.91
CLN3-216ENST00000565316 RABGAP1Q9Y3P9 1069 aa20.75■□□□□ 0.91
CLN3-216ENST00000565316 CNMDO75829 334 aa20.74■□□□□ 0.91
CLN3-216ENST00000565316 VCAM1P19320 739 aa20.74■□□□□ 0.91
CLN3-216ENST00000565316 LBX2Q6XYB7 198 aa20.74■□□□□ 0.91
CLN3-216ENST00000565316 GPR142Q7Z601 462 aa20.74■□□□□ 0.91
CLN3-216ENST00000565316 PLEKHH3Q7Z736 793 aa20.74■□□□□ 0.91
CLN3-216ENST00000565316 TRMT44Q8IYL2 757 aaKnown RBP20.74■□□□□ 0.91
CLN3-216ENST00000565316 PAGR1Q9BTK6 254 aa20.74■□□□□ 0.91
CLN3-216ENST00000565316 DCP1AQ9NPI6 582 aaPredicted RBP20.74■□□□□ 0.91
CLN3-216ENST00000565316 RBM27Q9P2N5 1060 aaKnown RBP20.74■□□□□ 0.91
CLN3-216ENST00000565316 RCAN3Q9UKA8 241 aa20.74■□□□□ 0.91
CLN3-216ENST00000565316 ATP5JP18859 108 aa20.73■□□□□ 0.91
CLN3-216ENST00000565316 MNX1P50219 401 aaPredicted RBP20.73■□□□□ 0.91
CLN3-216ENST00000565316 PDE3AQ14432 1141 aa20.73■□□□□ 0.91
CLN3-216ENST00000565316 ZYXQ15942 572 aaKnown RBP20.73■□□□□ 0.91
CLN3-216ENST00000565316 NECAB2Q7Z6G3 386 aa20.73■□□□□ 0.91
CLN3-216ENST00000565316 LCORLQ8N3X6 602 aa20.73■□□□□ 0.91
CLN3-216ENST00000565316 EDC3Q96F86 508 aaKnown RBP20.73■□□□□ 0.91
CLN3-216ENST00000565316 MCM9Q9NXL9 1143 aa20.73■□□□□ 0.91
CLN3-216ENST00000565316 EVI5O60447 810 aa20.72■□□□□ 0.91
CLN3-216ENST00000565316 EVX2Q03828 476 aa20.72■□□□□ 0.91
CLN3-216ENST00000565316 DIS3LQ8TF46 1054 aaKnown RBP20.72■□□□□ 0.91
CLN3-216ENST00000565316 PAG1Q9NWQ8 432 aa20.72■□□□□ 0.91
CLN3-216ENST00000565316 OGDHLQ9ULD0 1010 aa20.72■□□□□ 0.91
CLN3-216ENST00000565316 PRKAR2AP13861 404 aaKnown RBP20.71■□□□□ 0.91
CLN3-216ENST00000565316 ADD2P35612 726 aa20.71■□□□□ 0.91
CLN3-216ENST00000565316 RGS2P41220 211 aa20.71■□□□□ 0.91
CLN3-216ENST00000565316 CCNA1P78396 465 aa20.71■□□□□ 0.91
CLN3-216ENST00000565316 SEPT2Q15019 361 aa20.71■□□□□ 0.91
CLN3-216ENST00000565316 CCAR1Q8IX12 1150 aaKnown RBP20.71■□□□□ 0.91
CLN3-216ENST00000565316 SDR42E1Q8WUS8 393 aa20.71■□□□□ 0.91
CLN3-216ENST00000565316 HAUS7Q99871 368 aa20.71■□□□□ 0.91
CLN3-216ENST00000565316 SZT2Q5T011 3432 aa20.7■□□□□ 0.9
CLN3-216ENST00000565316 ZKSCAN1P17029 563 aaPredicted RBP20.7■□□□□ 0.9
CLN3-216ENST00000565316 APBA2Q99767 749 aa20.7■□□□□ 0.9
CLN3-216ENST00000565316 BOLA2Q9H3K6 86 aa20.7■□□□□ 0.9
CLN3-216ENST00000565316 NAV1Q8NEY1 1877 aa20.7■□□□□ 0.9
CLN3-216ENST00000565316 A0A1W2PRG0 241 aa20.69■□□□□ 0.9
CLN3-216ENST00000565316 CYP2D6P10635 497 aa20.69■□□□□ 0.9
CLN3-216ENST00000565316 CACNB2Q08289 660 aaPredicted RBP20.69■□□□□ 0.9
CLN3-216ENST00000565316 NBPF3Q9H094 633 aa20.69■□□□□ 0.9
CLN3-216ENST00000565316 RPAP3Q9H6T3 665 aaPredicted RBP20.69■□□□□ 0.9
CLN3-216ENST00000565316 ARMT1Q9H993 441 aa20.69■□□□□ 0.9
CLN3-216ENST00000565316 ATP8A2Q9NTI2 1148 aa20.69■□□□□ 0.9
CLN3-216ENST00000565316 SWAP70Q9UH65 585 aa20.69■□□□□ 0.9
CLN3-216ENST00000565316 SLC15A5A6NIM6 579 aa20.68■□□□□ 0.9
CLN3-216ENST00000565316 SPDYE16A6NNV3 312 aaPredicted RBP20.68■□□□□ 0.9
CLN3-216ENST00000565316 GLRX3O76003 335 aaKnown RBP20.68■□□□□ 0.9
CLN3-216ENST00000565316 MAP2K5Q13163 448 aa20.68■□□□□ 0.9
CLN3-216ENST00000565316 CCL14Q16627 93 aa20.68■□□□□ 0.9
CLN3-216ENST00000565316 C20orf194Q5TEA3 1177 aa20.68■□□□□ 0.9
CLN3-216ENST00000565316 BTBD7Q9P203 1132 aa20.68■□□□□ 0.9
CLN3-216ENST00000565316 PRKAB2O43741 272 aa20.67■□□□□ 0.9
CLN3-216ENST00000565316 MBD4O95243 580 aa20.67■□□□□ 0.9
CLN3-216ENST00000565316 UBE3CQ15386 1083 aa20.67■□□□□ 0.9
CLN3-216ENST00000565316 SLFNL1Q499Z3 407 aa20.67■□□□□ 0.9
CLN3-216ENST00000565316 TMEM179Q6ZVK1 233 aa20.67■□□□□ 0.9
CLN3-216ENST00000565316 SLC44A5Q8NCS7 719 aa20.67■□□□□ 0.9
CLN3-216ENST00000565316 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.67■□□□□ 0.92e-6■■■■■ 40.7
CLN3-216ENST00000565316 A0A1W2PPC1 479 aa20.66■□□□□ 0.9
CLN3-216ENST00000565316 MPHOSPH10O00566 681 aaKnown RBP20.66■□□□□ 0.9
CLN3-216ENST00000565316 HOXC6P09630 235 aa20.66■□□□□ 0.9
CLN3-216ENST00000565316 PTPREP23469 700 aa20.66■□□□□ 0.9
CLN3-216ENST00000565316 LHX8Q68G74 356 aa20.66■□□□□ 0.9
CLN3-216ENST00000565316 DYNLL2Q96FJ2 89 aa20.66■□□□□ 0.9
CLN3-216ENST00000565316 LRRCC1Q9C099 1032 aa20.66■□□□□ 0.9
CLN3-216ENST00000565316 BCL11AQ9H165 835 aa20.66■□□□□ 0.9
CLN3-216ENST00000565316 C11orf49Q9H6J7 331 aa20.66■□□□□ 0.9
CLN3-216ENST00000565316 GRB14Q14449 540 aa20.65■□□□□ 0.9
CLN3-216ENST00000565316 COG2Q14746 738 aa20.65■□□□□ 0.9
CLN3-216ENST00000565316 C12orf60Q5U649 245 aa20.65■□□□□ 0.9
CLN3-216ENST00000565316 SIAH1Q8IUQ4 282 aa20.65■□□□□ 0.9
CLN3-216ENST00000565316 CWC22Q9HCG8 908 aaKnown RBP20.65■□□□□ 0.9
CLN3-216ENST00000565316 HOXC10Q9NYD6 342 aa20.65■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms