RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 ACSS3Q9H6R3 686 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 DAGLAQ9Y4D2 1042 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 SLC12A7Q9Y666 1083 aa7.08□□□□□ -1.28
LINC00560-201ENST00000564593 FAM86C2PA6NEL3 165 aa7.07□□□□□ -1.28
LINC00560-201ENST00000564593 TNFRSF10CO14798 259 aa7.07□□□□□ -1.28
LINC00560-201ENST00000564593 NFICP08651 508 aa7.07□□□□□ -1.28
LINC00560-201ENST00000564593 CAP2P40123 477 aa7.07□□□□□ -1.28
LINC00560-201ENST00000564593 PRAMEF13Q5VWM6 474 aa7.07□□□□□ -1.28
LINC00560-201ENST00000564593 TXNRD3Q86VQ6 643 aa7.07□□□□□ -1.28
LINC00560-201ENST00000564593 FBLIM1Q8WUP2 373 aa7.07□□□□□ -1.28
LINC00560-201ENST00000564593 MKL1Q969V6 931 aa7.07□□□□□ -1.28
LINC00560-201ENST00000564593 CDK11AQ9UQ88 783 aaPredicted RBP7.07□□□□□ -1.28
LINC00560-201ENST00000564593 CCDC85CA6NKD9 419 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 CST3P01034 146 aaPredicted RBP7.06□□□□□ -1.28
LINC00560-201ENST00000564593 BMP3P12645 472 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 RXRBP28702 533 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 ZYXQ15942 572 aaKnown RBP7.06□□□□□ -1.28
LINC00560-201ENST00000564593 DDR2Q16832 855 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 UVSSAQ2YD98 709 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 SGO2Q562F6 1265 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 GIMAP6Q6P9H5 292 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.06□□□□□ -1.28
LINC00560-201ENST00000564593 XAGE3Q8WTP9 111 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 UTP4Q969X6 686 aaKnown RBP7.06□□□□□ -1.28
LINC00560-201ENST00000564593 MRFAP1L1Q96HT8 127 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 CCDC74BQ96LY2 380 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 SRPK1Q96SB4 655 aaKnown RBP7.06□□□□□ -1.28
LINC00560-201ENST00000564593 KIF2CQ99661 725 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 FOXQ1Q9C009 403 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 SEMA6CQ9H3T2 930 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 LGR6Q9HBX8 967 aa7.06□□□□□ -1.28
LINC00560-201ENST00000564593 DDAH1O94760 285 aa7.05□□□□□ -1.28
LINC00560-201ENST00000564593 LRIG2O94898 1065 aa7.05□□□□□ -1.28
LINC00560-201ENST00000564593 POLR2BP30876 1174 aaKnown RBP7.05□□□□□ -1.28
LINC00560-201ENST00000564593 GBP1P32455 592 aa7.05□□□□□ -1.28
LINC00560-201ENST00000564593 DZIP1LQ8IYY4 767 aaKnown RBP7.05□□□□□ -1.28
LINC00560-201ENST00000564593 MICAL1Q8TDZ2 1067 aa7.05□□□□□ -1.28
LINC00560-201ENST00000564593 MEGF10Q96KG7 1140 aa7.05□□□□□ -1.28
LINC00560-201ENST00000564593 MYRFLQ96LU7 910 aa7.05□□□□□ -1.28
LINC00560-201ENST00000564593 RGS13O14921 159 aa7.04□□□□□ -1.28
LINC00560-201ENST00000564593 SMARCA5O60264 1052 aaPredicted RBP7.04□□□□□ -1.28
LINC00560-201ENST00000564593 CCNFP41002 786 aa7.04□□□□□ -1.28
LINC00560-201ENST00000564593 MAP7Q14244 749 aa7.04□□□□□ -1.28
LINC00560-201ENST00000564593 ARMCX6Q7L4S7 300 aa7.04□□□□□ -1.28
LINC00560-201ENST00000564593 MFSD2AQ8NA29 543 aa7.04□□□□□ -1.28
LINC00560-201ENST00000564593 CYB5D2Q8WUJ1 264 aa7.04□□□□□ -1.28
LINC00560-201ENST00000564593 EZH1Q92800 747 aaPredicted RBP7.04□□□□□ -1.28
LINC00560-201ENST00000564593 MAPK8IP1Q9UQF2 711 aa7.04□□□□□ -1.28
LINC00560-201ENST00000564593 LTBP3Q9NS15 1303 aa7.04□□□□□ -1.28
LINC00560-201ENST00000564593 MAP4P27816 1152 aaKnown RBP7.03□□□□□ -1.28
LINC00560-201ENST00000564593 C6orf15Q6UXA7 325 aaPredicted RBP7.03□□□□□ -1.28
LINC00560-201ENST00000564593 FAM20CQ8IXL6 584 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 ARMC10Q8N2F6 343 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 BAHD1Q8TBE0 780 aaPredicted RBP7.03□□□□□ -1.28
LINC00560-201ENST00000564593 DEPDC7Q96QD5 511 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 KCNF1Q9H3M0 494 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 PHAXQ9H814 394 aaKnown RBP7.03□□□□□ -1.28
LINC00560-201ENST00000564593 SNTG2Q9NY99 539 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 FAM95CA0A1B0GW59 222 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 UBOX5O94941 541 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 GJB6O95452 261 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 TP53INP1Q96A56 240 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 DHRS1Q96LJ7 313 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 SLC6A18Q96N87 628 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 CCDC113Q9H0I3 377 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 PCDHB10Q9UN67 800 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 MSRB2Q9Y3D2 182 aa7.03□□□□□ -1.28
LINC00560-201ENST00000564593 FAM221BA6H8Z2 402 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 DYNC1LI2O43237 492 aaPredicted RBP7.02□□□□□ -1.29
LINC00560-201ENST00000564593 CHMP4BP1P59074 171 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 RASA3Q14644 834 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 NFKBIBQ15653 356 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 GNPTABQ3T906 1256 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 VHLLQ6RSH7 139 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 LRP10Q7Z4F1 713 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 FAM178BQ8IXR5 827 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 TMEM192Q8IY95 271 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 SSBP4Q9BWG4 385 aaPredicted RBP7.02□□□□□ -1.29
LINC00560-201ENST00000564593 KRTAP17-1Q9BYP8 105 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 ZNF214Q9UL59 606 aaPredicted RBP7.02□□□□□ -1.29
LINC00560-201ENST00000564593 RNF112Q9ULX5 631 aa7.02□□□□□ -1.29
LINC00560-201ENST00000564593 COL17A1Q9UMD9 1497 aaPredicted RBP7.01□□□□□ -1.29
LINC00560-201ENST00000564593 B2RBV5 119 aa7.01□□□□□ -1.29
LINC00560-201ENST00000564593 PDPK1O15530 556 aa7.01□□□□□ -1.29
LINC00560-201ENST00000564593 DHX15O43143 795 aaKnown RBP7.01□□□□□ -1.29
LINC00560-201ENST00000564593 PAX4O43316 350 aa7.01□□□□□ -1.29
LINC00560-201ENST00000564593 SLC7A5Q01650 507 aa7.01□□□□□ -1.29
LINC00560-201ENST00000564593 NCAPHQ15003 741 aa7.01□□□□□ -1.29
LINC00560-201ENST00000564593 ZNF746Q6NUN9 644 aaPredicted RBP7.01□□□□□ -1.29
LINC00560-201ENST00000564593 BEND4Q6ZU67 534 aa7.01□□□□□ -1.29
LINC00560-201ENST00000564593 MIPEPQ99797 713 aa7.01□□□□□ -1.29
LINC00560-201ENST00000564593 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.01□□□□□ -1.29
LINC00560-201ENST00000564593 TLDC2A0PJX2 215 aa7□□□□□ -1.29
LINC00560-201ENST00000564593 CLEC3AO75596 197 aa7□□□□□ -1.29
LINC00560-201ENST00000564593 TXKP42681 527 aa7□□□□□ -1.29
LINC00560-201ENST00000564593 BBS9Q3SYG4 887 aa7□□□□□ -1.29
LINC00560-201ENST00000564593 KIAA1211LQ6NV74 962 aa7□□□□□ -1.29
LINC00560-201ENST00000564593 LETMD1Q6P1Q0 360 aa7□□□□□ -1.29
LINC00560-201ENST00000564593 PAOXQ6QHF9 649 aa7□□□□□ -1.29
LINC00560-201ENST00000564593 SUCOQ9UBS9 1254 aaKnown RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms