RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 RBM28Q9NW13 759 aaKnown RBP16.28■□□□□ 0.2
CLK3-209ENST00000562670 UTRNP46939 3433 aa16.28■□□□□ 0.2
CLK3-209ENST00000562670 STK36Q9NRP7 1315 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 NMT2O60551 498 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 CTDNEP1O95476 244 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 GJB2P29033 226 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 RTN1Q16799 776 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 CERKLQ49MI3 558 aaPredicted RBP16.27■□□□□ 0.2
CLK3-209ENST00000562670 TMEM179Q6ZVK1 233 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 CEP95Q96GE4 821 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 KAT14Q9H8E8 782 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 FOXD4L1Q9NU39 408 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 GINM1Q9NU53 330 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 MTMR4Q9NYA4 1195 aa16.27■□□□□ 0.2
CLK3-209ENST00000562670 PTPDC1A2A3K4 754 aa16.26■□□□□ 0.19
CLK3-209ENST00000562670 IQCA1LA6NCM1 817 aa16.26■□□□□ 0.19
CLK3-209ENST00000562670 CPLX1O14810 134 aa16.26■□□□□ 0.19
CLK3-209ENST00000562670 TOP1P11387 765 aaKnown RBP16.26■□□□□ 0.19
CLK3-209ENST00000562670 IFNAR1P17181 557 aa16.26■□□□□ 0.19
CLK3-209ENST00000562670 CCT2P78371 535 aaKnown RBP16.26■□□□□ 0.19
CLK3-209ENST00000562670 RAB3GAP1Q15042 981 aa16.26■□□□□ 0.19
CLK3-209ENST00000562670 RBM26Q5T8P6 1007 aaKnown RBP16.26■□□□□ 0.19
CLK3-209ENST00000562670 USP50Q70EL3 339 aaPredicted RBP16.26■□□□□ 0.19
CLK3-209ENST00000562670 FANCBQ8NB91 859 aa16.26■□□□□ 0.19
CLK3-209ENST00000562670 PNMA1Q8ND90 353 aa16.26■□□□□ 0.19
CLK3-209ENST00000562670 ZC3H15Q8WU90 426 aaKnown RBP16.26■□□□□ 0.19
CLK3-209ENST00000562670 DEFB129Q9H1M3 183 aa16.26■□□□□ 0.19
CLK3-209ENST00000562670 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.26■□□□□ 0.19
CLK3-209ENST00000562670 NCOA5Q9HCD5 579 aaKnown RBP16.26■□□□□ 0.19
CLK3-209ENST00000562670 FAM217BQ9NTX9 383 aaPredicted RBP16.26■□□□□ 0.19
CLK3-209ENST00000562670 GGA3Q9NZ52 723 aa16.26■□□□□ 0.19
CLK3-209ENST00000562670 NAP1L2Q9ULW6 460 aaPredicted RBP16.26■□□□□ 0.19
CLK3-209ENST00000562670 TTLL1O95922 423 aa16.25■□□□□ 0.19
CLK3-209ENST00000562670 KIF5BP33176 963 aa16.25■□□□□ 0.19
CLK3-209ENST00000562670 HIRAP54198 1017 aaPredicted RBP16.25■□□□□ 0.19
CLK3-209ENST00000562670 NTRK3Q16288 839 aa16.25■□□□□ 0.19
CLK3-209ENST00000562670 ANGEL2Q5VTE6 544 aaKnown RBP16.25■□□□□ 0.19
CLK3-209ENST00000562670 TMEM47Q9BQJ4 181 aa16.25■□□□□ 0.19
CLK3-209ENST00000562670 KANSL2Q9H9L4 492 aa16.25■□□□□ 0.19
CLK3-209ENST00000562670 NYAP2Q9P242 653 aa16.25■□□□□ 0.19
CLK3-209ENST00000562670 STX8Q9UNK0 236 aa16.25■□□□□ 0.19
CLK3-209ENST00000562670 ASTN2O75129 1339 aaPredicted RBP16.24■□□□□ 0.19
CLK3-209ENST00000562670 JAK2O60674 1132 aa16.24■□□□□ 0.19
CLK3-209ENST00000562670 CDC27P30260 824 aa16.24■□□□□ 0.19
CLK3-209ENST00000562670 ABCB5Q2M3G0 1257 aa16.24■□□□□ 0.19
CLK3-209ENST00000562670 DCAF15Q66K64 600 aa16.24■□□□□ 0.19
CLK3-209ENST00000562670 CTCFLQ8NI51 663 aaPredicted RBP16.24■□□□□ 0.19
CLK3-209ENST00000562670 MKL1Q969V6 931 aa16.24■□□□□ 0.19
CLK3-209ENST00000562670 WDR33Q9C0J8 1336 aaKnown RBP16.23■□□□□ 0.19
CLK3-209ENST00000562670 FAM196BA6NMK8 535 aa16.23■□□□□ 0.19
CLK3-209ENST00000562670 BRD1O95696 1058 aa16.23■□□□□ 0.19
CLK3-209ENST00000562670 GNAQP50148 359 aa16.23■□□□□ 0.19
CLK3-209ENST00000562670 GRM4Q14833 912 aa16.23■□□□□ 0.19
CLK3-209ENST00000562670 TMTC3Q6ZXV5 915 aa16.23■□□□□ 0.19
CLK3-209ENST00000562670 CDAN1Q8IWY9 1227 aa16.23■□□□□ 0.19
CLK3-209ENST00000562670 MYL10Q9BUA6 226 aa16.23■□□□□ 0.19
CLK3-209ENST00000562670 STX6O43752 255 aa16.22■□□□□ 0.19
CLK3-209ENST00000562670 SNHG28P0DPA3 235 aa16.22■□□□□ 0.19
CLK3-209ENST00000562670 SYT1P21579 422 aa16.22■□□□□ 0.19
CLK3-209ENST00000562670 GUCY1A2P33402 732 aa16.22■□□□□ 0.19
CLK3-209ENST00000562670 EPHX2P34913 555 aa16.22■□□□□ 0.19
CLK3-209ENST00000562670 ADD1P35611 737 aaKnown RBP16.22■□□□□ 0.19
CLK3-209ENST00000562670 FUT2Q10981 343 aa16.22■□□□□ 0.19
CLK3-209ENST00000562670 NUP133Q8WUM0 1156 aa16.22■□□□□ 0.19
CLK3-209ENST00000562670 LZTS2Q9BRK4 669 aa16.22■□□□□ 0.19
CLK3-209ENST00000562670 RNF26Q9BY78 433 aaPredicted RBP16.22■□□□□ 0.19
CLK3-209ENST00000562670 CABP5Q9NP86 173 aa16.22■□□□□ 0.19
CLK3-209ENST00000562670 RBM27Q9P2N5 1060 aaKnown RBP16.22■□□□□ 0.19
CLK3-209ENST00000562670 SSC5DA1L4H1 1573 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 MYH4Q9Y623 1939 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 PAPPA2Q9BXP8 1791 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 PHF20L1A8MW92 1017 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 MPHOSPH10O00566 681 aaKnown RBP16.21■□□□□ 0.19
CLK3-209ENST00000562670 FMNL1O95466 1100 aaPredicted RBP16.21■□□□□ 0.19
CLK3-209ENST00000562670 RXRAP19793 462 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 SMARCA1P28370 1054 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 CAP2P40123 477 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 ICA1Q05084 483 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 CLEC17AQ6ZS10 378 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 NBPF11Q86T75 865 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 PNMA8AQ86V59 439 aaPredicted RBP16.21■□□□□ 0.19
CLK3-209ENST00000562670 FAM184AQ8NB25 1140 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 TAF1DQ9H5J8 278 aaPredicted RBP16.21■□□□□ 0.19
CLK3-209ENST00000562670 ZBTB21Q9ULJ3 1066 aa16.21■□□□□ 0.19
CLK3-209ENST00000562670 DOCK1Q14185 1865 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 ATAD5Q96QE3 1844 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 PALM3A6NDB9 673 aaPredicted RBP16.2■□□□□ 0.18
CLK3-209ENST00000562670 GH2P01242 217 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 ASNSP08243 561 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 SLURP2P0DP57 97 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 FDPSP14324 419 aaKnown RBP16.2■□□□□ 0.18
CLK3-209ENST00000562670 RRP1BQ14684 758 aaKnown RBP16.2■□□□□ 0.18
CLK3-209ENST00000562670 ASPRV1Q53RT3 343 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 RAB11FIP4Q86YS3 637 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 TRIM22Q8IYM9 498 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 GMCL1P1Q8NEA9 526 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 WASF1Q92558 559 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 ZNF341Q9BYN7 854 aa16.2■□□□□ 0.18
CLK3-209ENST00000562670 ORC3Q9UBD5 711 aaPredicted RBP16.2■□□□□ 0.18
CLK3-209ENST00000562670 ZNF112Q9UJU3 913 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms