RNA–Protein interactions for RNA: ENST00000562389.5

CLK3-207, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 572 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-207ENST00000562389 GADL1Q6ZQY3 521 aa19.89■□□□□ 0.77
CLK3-207ENST00000562389 STK11IPQ8N1F8 1099 aa19.89■□□□□ 0.77
CLK3-207ENST00000562389 SLC45A1Q9Y2W3 748 aa19.89■□□□□ 0.77
CLK3-207ENST00000562389 SGSM2O43147 1006 aa19.88■□□□□ 0.77
CLK3-207ENST00000562389 CRHR2Q13324 411 aa19.88■□□□□ 0.77
CLK3-207ENST00000562389 ZFYVE28Q9HCC9 887 aa19.88■□□□□ 0.77
CLK3-207ENST00000562389 AGTPBP1Q9UPW5 1226 aa19.88■□□□□ 0.77
CLK3-207ENST00000562389 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.88■□□□□ 0.77
CLK3-207ENST00000562389 PLIN4Q96Q06 1357 aa19.87■□□□□ 0.77
CLK3-207ENST00000562389 PDHXO00330 501 aa19.87■□□□□ 0.77
CLK3-207ENST00000562389 CTDSPL2Q05D32 466 aa19.87■□□□□ 0.77
CLK3-207ENST00000562389 IFFO2Q5TF58 517 aa19.87■□□□□ 0.77
CLK3-207ENST00000562389 ZNF444Q8N0Y2 327 aaPredicted RBP19.87■□□□□ 0.77
CLK3-207ENST00000562389 KIAA1683Q9H0B3 1180 aa19.87■□□□□ 0.77
CLK3-207ENST00000562389 R3HDMLQ9H3Y0 253 aa19.87■□□□□ 0.77
CLK3-207ENST00000562389 TMOD4Q9NZQ9 345 aa19.87■□□□□ 0.77
CLK3-207ENST00000562389 CASP8AP2Q9UKL3 1982 aa19.86■□□□□ 0.77
CLK3-207ENST00000562389 PRDM1O75626 825 aa19.86■□□□□ 0.77
CLK3-207ENST00000562389 FGRP09769 529 aa19.86■□□□□ 0.77
CLK3-207ENST00000562389 USP14P54578 494 aa19.86■□□□□ 0.77
CLK3-207ENST00000562389 ICA1Q05084 483 aa19.86■□□□□ 0.77
CLK3-207ENST00000562389 USP17L2Q6R6M4 530 aa19.86■□□□□ 0.77
CLK3-207ENST00000562389 ACER1Q8TDN7 264 aa19.86■□□□□ 0.77
CLK3-207ENST00000562389 C12orf42Q96LP6 360 aa19.86■□□□□ 0.77
CLK3-207ENST00000562389 FEZ1Q99689 392 aa19.86■□□□□ 0.77
CLK3-207ENST00000562389 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.86■□□□□ 0.77
CLK3-207ENST00000562389 KANSL2Q9H9L4 492 aa19.86■□□□□ 0.77
CLK3-207ENST00000562389 GPR25O00155 361 aa19.85■□□□□ 0.77
CLK3-207ENST00000562389 DGKZQ13574 1117 aa19.85■□□□□ 0.77
CLK3-207ENST00000562389 TREML2Q5T2D2 321 aa19.85■□□□□ 0.77
CLK3-207ENST00000562389 PARK7Q99497 189 aaKnown RBP19.85■□□□□ 0.77
CLK3-207ENST00000562389 ARHGEF10LQ9HCE6 1279 aa19.85■□□□□ 0.77
CLK3-207ENST00000562389 CTNNA3Q9UI47 895 aa19.85■□□□□ 0.77
CLK3-207ENST00000562389 MYH4Q9Y623 1939 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 ADGRA2Q96PE1 1338 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 IGKV6D-41A0A0C4DH26 115 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 ORC4O43929 436 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 TLR2O60603 784 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 PCP11498 1178 aaKnown RBP19.84■□□□□ 0.77
CLK3-207ENST00000562389 HAND2P61296 217 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 PABPC4Q13310 644 aaKnown RBP eCLIP19.84■□□□□ 0.77
CLK3-207ENST00000562389 CLEC10AQ8IUN9 316 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 SIAH1Q8IUQ4 282 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 NBPF3Q9H094 633 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 EMILIN3Q9NT22 766 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 TACC3Q9Y6A5 838 aa19.84■□□□□ 0.77
CLK3-207ENST00000562389 A0A1W2PRG0 241 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 ZNF213O14771 459 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 CDC45O75419 566 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 TSPY3P0CV98 308 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 TSPY8P0CW00 308 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 NEDD1Q8NHV4 660 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 ZNF296Q8WUU4 475 aaPredicted RBP19.83■□□□□ 0.77
CLK3-207ENST00000562389 STAG1Q8WVM7 1258 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 ESYT1Q9BSJ8 1104 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 SH2D4AQ9H788 454 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 PNMA3Q9UL41 463 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 TMX2Q9Y320 296 aa19.83■□□□□ 0.77
CLK3-207ENST00000562389 EEF2P13639 858 aaKnown RBP19.82■□□□□ 0.76
CLK3-207ENST00000562389 HOXA7P31268 230 aaPredicted RBP19.82■□□□□ 0.76
CLK3-207ENST00000562389 PTH1RQ03431 593 aa19.82■□□□□ 0.76
CLK3-207ENST00000562389 ZYXQ15942 572 aaKnown RBP19.82■□□□□ 0.76
CLK3-207ENST00000562389 IMMTQ16891 758 aaKnown RBP19.82■□□□□ 0.76
CLK3-207ENST00000562389 AKNAD1Q5T1N1 836 aa19.82■□□□□ 0.76
CLK3-207ENST00000562389 TBC1D10CQ8IV04 446 aa19.82■□□□□ 0.76
CLK3-207ENST00000562389 RNF41Q9H4P4 317 aaPredicted RBP19.82■□□□□ 0.76
CLK3-207ENST00000562389 INCENPQ9NQS7 918 aa19.82■□□□□ 0.76
CLK3-207ENST00000562389 FKTNO75072 461 aa19.81■□□□□ 0.76
CLK3-207ENST00000562389 CYP2C8P10632 490 aa19.81■□□□□ 0.76
CLK3-207ENST00000562389 TFAP4Q01664 338 aa19.81■□□□□ 0.76
CLK3-207ENST00000562389 FAM47AQ5JRC9 791 aa19.81■□□□□ 0.76
CLK3-207ENST00000562389 CASC1Q6TDU7 716 aa19.81■□□□□ 0.76
CLK3-207ENST00000562389 NYAP2Q9P242 653 aa19.81■□□□□ 0.76
CLK3-207ENST00000562389 TSPY2A6NKD2 308 aa19.8■□□□□ 0.76
CLK3-207ENST00000562389 VCAM1P19320 739 aa19.8■□□□□ 0.76
CLK3-207ENST00000562389 OSBPP22059 807 aa19.8■□□□□ 0.76
CLK3-207ENST00000562389 NT5C2P49902 561 aa19.8■□□□□ 0.76
CLK3-207ENST00000562389 C17orf99Q6UX52 265 aa19.8■□□□□ 0.76
CLK3-207ENST00000562389 MFSD6Q6ZSS7 791 aa19.8■□□□□ 0.76
CLK3-207ENST00000562389 LPAR1Q92633 364 aa19.8■□□□□ 0.76
CLK3-207ENST00000562389 CEP95Q96GE4 821 aa19.8■□□□□ 0.76
CLK3-207ENST00000562389 VCPKMTQ9H867 229 aa19.8■□□□□ 0.76
CLK3-207ENST00000562389 MTMR4Q9NYA4 1195 aa19.8■□□□□ 0.76
CLK3-207ENST00000562389 U3KPZ7 1027 aaPredicted RBP19.8■□□□□ 0.76
CLK3-207ENST00000562389 RANBP6O60518 1105 aaKnown RBP19.79■□□□□ 0.76
CLK3-207ENST00000562389 ATP2B2Q01814 1243 aa19.79■□□□□ 0.76
CLK3-207ENST00000562389 SP3Q02447 781 aa19.79■□□□□ 0.76
CLK3-207ENST00000562389 PPP4R3BQ5MIZ7 849 aa19.79■□□□□ 0.76
CLK3-207ENST00000562389 KIAA1211Q6ZU35 1233 aa19.79■□□□□ 0.76
CLK3-207ENST00000562389 MAP4K1Q92918 833 aa19.79■□□□□ 0.76
CLK3-207ENST00000562389 ASCC2Q9H1I8 757 aaPredicted RBP19.79■□□□□ 0.76
CLK3-207ENST00000562389 TOMM22Q9NS69 142 aa19.79■□□□□ 0.76
CLK3-207ENST00000562389 NEDD4P46934 1319 aa19.78■□□□□ 0.76
CLK3-207ENST00000562389 TTLL1O95922 423 aa19.78■□□□□ 0.76
CLK3-207ENST00000562389 IRX3P78415 501 aaPredicted RBP19.78■□□□□ 0.76
CLK3-207ENST00000562389 RRP12Q5JTH9 1297 aaKnown RBP19.78■□□□□ 0.76
CLK3-207ENST00000562389 COL13A1Q5TAT6 717 aaPredicted RBP19.78■□□□□ 0.76
CLK3-207ENST00000562389 SMCR8Q8TEV9 937 aaPredicted RBP19.78■□□□□ 0.76
CLK3-207ENST00000562389 LSG1Q9H089 658 aaKnown RBP19.78■□□□□ 0.76
CLK3-207ENST00000562389 GOPCQ9HD26 462 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms